Notemigonus crysoleucas
Golden shiner
GC content
44.20%
Whole genome
Non-coding
969 bp
D-loop 906 bp
Where Golden shiner sits among 2,335 species
Whole-genome GC content against maximum lifespan. Golden shiner has the 1,649th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,583 bp
- GC skew (G − C) / (G + C)
- −0.206
- AT skew (A − T) / (A + T)
- +0.046
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,583 bp
Protein-coding11,408 bp
12S rRNA957 bp
16S rRNA1,691 bp
All tRNA1,563 bp
D-loop906 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.13% | −0.232 | −0.092 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 46.23% | −0.372 | +0.087 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.49% | −0.154 | −0.069 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.98% | −0.205 | +0.015 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 40.00% | −0.485 | +0.232 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.40% | −0.324 | −0.005 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.54% | −0.188 | −0.063 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 43.59% | −0.216 | −0.071 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.81% | −0.239 | −0.110 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,383 bp | 43.53% | −0.302 | +0.012 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 42.97% | −0.303 | +0.032 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.13% | −0.374 | +0.413 | |||||
| CYTBCytochrome b | 1,141 bp | 44.61% | −0.273 | −0.032 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 49.63% | −0.057 | +0.216 | |||||
| 16S rRNA16S ribosomal RNA | 1,691 bp | 44.06% | −0.026 | +0.230 | |||||
| D-loopControl region (D-loop) | 906 bp | 35.98% | −0.141 | −0.017 |
Codon usage
Counts per codon, darker is more frequent3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU104
UUC121
Leu L16.4%
UUA114
UUG26
CUU137
CUC90
CUA199
CUG58
Ile I7.2%
AUU166
AUC107
Met M4.8%
AUA111
AUG70
Val V6.5%
GUU60
GUC55
GUA95
GUG36
Ser S6.2%
UCU43
UCC56
UCA70
UCG12
AGU12
AGC43
Pro P5.6%
CCU47
CCC69
CCA83
CCG16
Thr T8.0%
ACU52
ACC108
ACA120
ACG23
Ala A8.8%
GCU58
GCC132
GCA131
GCG16
Tyr Y2.9%
UAU58
UAC54
His H2.7%
CAU32
CAC70
Gln Q2.7%
CAA82
CAG19
Asn N3.2%
AAU49
AAC71
Lys K2.1%
AAA67
AAG12
Asp D2.0%
GAU29
GAC48
Glu E2.6%
GAA66
GAG34
Cys C0.7%
UGU12
UGC15
Trp W3.1%
UGA96
UGG23
Arg R2.0%
CGU7
CGC13
CGA42
CGG14
Gly G6.4%
GGU40
GGC55
GGA96
GGG54
Stop 0.3%
UAA6
UAG4
AGA0
AGG0
Genome map
38 annotated features in NC_008646.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,026 | 957 bp | + | 49.6% |
| tRNA-Val | Transfer RNA | 1,027 | 1,098 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,099 | 2,789 | 1,691 bp | + | 44.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,790 | 2,865 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,867 | 3,841 | 975 bp | + | 45.1% |
| tRNA-Ile | Transfer RNA | 3,846 | 3,917 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,916 | 3,986 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,987 | 4,055 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,056 | 5,102 | 1,047 bp | + | 46.2% |
| tRNA-Trp | Transfer RNA | 5,101 | 5,171 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,173 | 5,241 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,243 | 5,315 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,349 | 5,416 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,418 | 5,488 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,490 | 7,040 | 1,551 bp | + | 44.5% |
| tRNA-Ser (AGY) | Transfer RNA | 7,041 | 7,111 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,115 | 7,188 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,202 | 7,892 | 691 bp | + | 43.0% |
| tRNA-Lys | Transfer RNA | 7,893 | 7,968 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,970 | 8,134 | 165 bp | + | 40.0% |
| ATP6 | Protein-coding gene | 8,128 | 8,811 | 684 bp | + | 42.4% |
| COX3 | Protein-coding gene | 8,811 | 9,594 | 784 bp | + | 45.5% |
| tRNA-Gly | Transfer RNA | 9,595 | 9,666 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,667 | 10,017 | 351 bp | + | 43.6% |
| tRNA-Arg | Transfer RNA | 10,016 | 10,084 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,085 | 10,381 | 297 bp | + | 47.8% |
| ND4 | Protein-coding gene | 10,375 | 11,757 | 1,383 bp | + | 43.5% |
| tRNA-His | Transfer RNA | 11,757 | 11,825 | 69 bp | + | – |
| tRNA-Ser (UCN) | Transfer RNA | 11,826 | 11,894 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,896 | 11,968 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,969 | 13,804 | 1,836 bp | + | 43.0% |
| ND6 | Protein-coding gene | 13,801 | 14,322 | 522 bp | − | 47.1% |
| tRNA-Glu | Transfer RNA | 14,323 | 14,392 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,396 | 15,536 | 1,141 bp | + | 44.6% |
| tRNA-Thr | Transfer RNA | 15,537 | 15,608 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,608 | 15,677 | 70 bp | − | – |
| D-loop | Control region | 15,678 | 16,583 | 906 bp | – | 36.0% |