Nothobranchius furzeri
Turquoise killifish
GC content
38.60%
Whole genome
Non-coding
3,940 bp
Including the D-loop
Where Turquoise killifish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Turquoise killifish has the 2,298th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome19,527 bp
- GC skew (G − C) / (G + C)
- −0.225
- AT skew (A − T) / (A + T)
- +0.016
Life history
- Maximum lifespan
- 1.1 years
- Male sexual maturity
- 28 days
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03990)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, large sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome19,527 bp
Protein-coding11,375 bp
12S rRNA945 bp
16S rRNA1,670 bp
All tRNA1,598 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 38.36% | −0.241 | −0.038 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,036 bp | 38.42% | −0.412 | +0.031 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 40.97% | −0.172 | −0.107 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 37.77% | −0.226 | −0.014 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 37.50% | −0.365 | −0.029 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 38.07% | −0.423 | −0.050 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 40.05% | −0.191 | −0.102 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 39.26% | −0.285 | −0.160 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 38.38% | −0.281 | −0.191 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 37.73% | −0.317 | −0.030 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,842 bp | 36.37% | −0.284 | −0.041 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 35.65% | −0.297 | +0.377 | |||||
| CYTBCytochrome b | 1,137 bp | 39.31% | −0.293 | −0.107 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 41.27% | −0.097 | +0.160 | |||||
| 16S rRNA16S ribosomal RNA | 1,670 bp | 37.19% | −0.027 | +0.188 |
Codon usage
Counts per codon, darker is more frequent3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.5%
UUU163
UUC85
Leu L16.7%
UUA208
UUG43
CUU131
CUC63
CUA157
CUG33
Ile I8.3%
AUU185
AUC130
Met M5.3%
AUA158
AUG43
Val V5.2%
GUU71
GUC33
GUA76
GUG16
Ser S7.3%
UCU60
UCC50
UCA94
UCG14
AGU26
AGC32
Pro P5.4%
CCU77
CCC72
CCA52
CCG3
Thr T7.8%
ACU74
ACC84
ACA126
ACG12
Ala A7.2%
GCU91
GCC69
GCA108
GCG7
Tyr Y3.1%
UAU70
UAC48
His H2.6%
CAU43
CAC54
Gln Q2.4%
CAA78
CAG14
Asn N3.8%
AAU66
AAC79
Lys K2.3%
AAA82
AAG7
Asp D1.9%
GAU42
GAC30
Glu E2.4%
GAA77
GAG15
Cys C0.8%
UGU20
UGC10
Trp W3.1%
UGA96
UGG21
Arg R1.9%
CGU7
CGC8
CGA50
CGG7
Gly G5.9%
GGU60
GGC58
GGA71
GGG34
Stop 0.2%
UAA4
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_011814.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA23
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (38.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,014 | 945 bp | + | 41.3% |
| tRNA-Val | Transfer RNA | 1,014 | 1,085 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,756 | 1,670 bp | + | 37.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,837 | 2,909 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,910 | 3,884 | 975 bp | + | 38.4% |
| tRNA-Ile | Transfer RNA | 3,886 | 3,954 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,954 | 4,024 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,024 | 4,093 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,094 | 5,129 | 1,036 bp | + | 38.4% |
| tRNA-Trp | Transfer RNA | 5,130 | 5,200 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,199 | 5,267 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,268 | 5,340 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,377 | 5,441 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,448 | 5,514 | 67 bp | − | – |
| COX1 | Protein-coding gene | 5,516 | 7,060 | 1,545 bp | + | 41.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,064 | 7,134 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,138 | 7,205 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,209 | 7,899 | 691 bp | + | 37.8% |
| tRNA-Lys | Transfer RNA | 7,900 | 7,972 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,974 | 8,141 | 168 bp | + | 37.5% |
| ATP6 | Protein-coding gene | 8,132 | 8,814 | 683 bp | + | 38.1% |
| COX3 | Protein-coding gene | 8,815 | 9,598 | 784 bp | + | 40.1% |
| tRNA-Gly | Transfer RNA | 9,599 | 9,667 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,668 | 10,016 | 349 bp | + | 39.3% |
| tRNA-Arg | Transfer RNA | 10,017 | 10,085 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,087 | 10,383 | 297 bp | + | 38.4% |
| ND4 | Protein-coding gene | 10,377 | 11,757 | 1,381 bp | + | 37.7% |
| tRNA-His | Transfer RNA | 11,758 | 11,826 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,827 | 11,895 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,896 | 11,968 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,969 | 13,810 | 1,842 bp | + | 36.4% |
| ND6 | Protein-coding gene | 13,796 | 14,314 | 519 bp | − | 35.7% |
| tRNA-Gln | Transfer RNA | 14,316 | 14,381 | 66 bp | − | – |
| CYTB | Protein-coding gene | 14,384 | 15,520 | 1,137 bp | + | 39.3% |
| tRNA-Thr | Transfer RNA | 15,521 | 15,589 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 17,681 | 17,749 | 69 bp | − | – |
| tRNA-Glu | Transfer RNA | 18,933 | 19,000 | 68 bp | − | – |