Notochelys platynota
Malayan flat-shelled turtle
GC content
37.50%
Whole genome
Non-coding
1,515 bp
D-loop 1,457 bp
Where Malayan flat-shelled turtle sits among 2,335 species
Whole-genome GC content against maximum lifespan. Malayan flat-shelled turtle has the 1,002nd longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome16,981 bp
- GC skew (G − C) / (G + C)
- −0.347
- AT skew (A − T) / (A + T)
- +0.101
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, tiny sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,981 bp
Protein-coding11,354 bp
12S rRNA962 bp
16S rRNA1,611 bp
All tRNA1,548 bp
D-loop1,457 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 969 bp | 37.56% | −0.456 | +0.094 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,039 bp | 37.06% | −0.517 | +0.180 | |||||
| COX1Cytochrome c oxidase subunit I | 1,548 bp | 41.28% | −0.174 | −0.043 | |||||
| COX2Cytochrome c oxidase subunit II | 687 bp | 35.23% | −0.240 | +0.065 | |||||
| ATP8ATP synthase F0 subunit 8 | 189 bp | 29.10% | −0.673 | +0.104 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 36.70% | −0.474 | +0.062 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 40.94% | −0.283 | +0.028 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 36.96% | −0.411 | +0.018 | |||||
| ND4LNADH dehydrogenase subunit 4L | 300 bp | 42.00% | −0.508 | +0.011 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,377 bp | 37.18% | −0.422 | +0.089 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,806 bp | 37.54% | −0.481 | +0.126 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 37.93% | −0.606 | +0.537 | |||||
| CYTBCytochrome b | 1,144 bp | 41.61% | −0.433 | +0.048 | |||||
| 12S rRNA12S ribosomal RNA | 962 bp | 39.92% | −0.167 | +0.228 | |||||
| 16S rRNA16S ribosomal RNA | 1,611 bp | 38.42% | −0.163 | +0.284 | |||||
| D-loopControl region (D-loop) | 1,457 bp | 27.52% | −0.397 | −0.112 |
Codon usage
Counts per codon, darker is more frequent3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU104
UUC127
Leu L15.9%
UUA182
UUG23
CUU62
CUC79
CUA237
CUG19
Ile I8.3%
AUU159
AUC158
Met M6.7%
AUA218
AUG38
Val V4.2%
GUU37
GUC21
GUA94
GUG7
Ser S7.0%
UCU57
UCC40
UCA117
UCG5
AGU19
AGC26
Pro P5.5%
CCU28
CCC39
CCA139
CCG4
Thr T9.4%
ACU87
ACC118
ACA151
ACG2
Ala A6.3%
GCU52
GCC97
GCA81
GCG10
Tyr Y3.3%
UAU58
UAC69
His H2.7%
CAU47
CAC56
Gln Q2.8%
CAA99
CAG6
Asn N3.9%
AAU52
AAC97
Lys K2.3%
AAA82
AAG6
Asp D1.5%
GAU26
GAC31
Glu E2.4%
GAA82
GAG10
Cys C0.9%
UGU22
UGC12
Trp W2.9%
UGA102
UGG9
Arg R1.8%
CGU9
CGC12
CGA47
CGG0
Gly G5.7%
GGU38
GGC59
GGA82
GGG39
Stop 0.2%
UAA6
UAG1
AGA0
AGG2
Genome map
38 annotated features in NC_020665.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (37.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,032 | 962 bp | + | 39.9% |
| tRNA-Val | Transfer RNA | 1,033 | 1,102 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,103 | 2,713 | 1,611 bp | + | 38.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,714 | 2,789 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,791 | 3,759 | 969 bp | + | 37.6% |
| tRNA-Ile | Transfer RNA | 3,762 | 3,831 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,831 | 3,901 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,901 | 3,969 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,970 | 5,008 | 1,039 bp | + | 37.1% |
| tRNA-Trp | Transfer RNA | 5,009 | 5,084 | 76 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,086 | 5,154 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,156 | 5,228 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,257 | 5,322 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,324 | 5,394 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,396 | 6,943 | 1,548 bp | + | 41.3% |
| tRNA-Ser (UCN) | Transfer RNA | 6,935 | 7,005 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,008 | 7,077 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,078 | 7,764 | 687 bp | + | 35.2% |
| tRNA-Lys | Transfer RNA | 7,766 | 7,838 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,840 | 8,028 | 189 bp | + | 29.1% |
| ATP6 | Protein-coding gene | 7,998 | 8,681 | 684 bp | + | 36.7% |
| COX3 | Protein-coding gene | 8,681 | 9,464 | 784 bp | + | 40.9% |
| tRNA-Gly | Transfer RNA | 9,465 | 9,532 | 68 bp | + | – |
| ND3 | Protein-coding gene | 9,533 | 9,881 | 349 bp | + | 37.0% |
| tRNA-Arg | Transfer RNA | 9,882 | 9,951 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,952 | 10,251 | 300 bp | + | 42.0% |
| ND4 | Protein-coding gene | 10,245 | 11,621 | 1,377 bp | + | 37.2% |
| tRNA-His | Transfer RNA | 11,633 | 11,702 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,703 | 11,768 | 66 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,768 | 11,839 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,840 | 13,645 | 1,806 bp | + | 37.5% |
| ND6 | Protein-coding gene | 13,641 | 14,162 | 522 bp | − | 37.9% |
| tRNA-Glu | Transfer RNA | 14,166 | 14,233 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,238 | 15,381 | 1,144 bp | + | 41.6% |
| tRNA-Thr | Transfer RNA | 15,382 | 15,453 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,455 | 15,524 | 70 bp | − | – |
| D-loop | Control region | 15,525 | 16,981 | 1,457 bp | – | 27.5% |