Notropis buccata
Silverjaw minnow
GC content
46.51%
Whole genome
Non-coding
1,107 bp
D-loop 1,053 bp
Where Silverjaw minnow sits among 2,335 species
Whole-genome GC content against maximum lifespan. Silverjaw minnow has the 2,206th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,714 bp
- GC skew (G − C) / (G + C)
- −0.168
- AT skew (A − T) / (A + T)
- −0.006
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,714 bp
Protein-coding11,403 bp
12S rRNA959 bp
16S rRNA1,681 bp
All tRNA1,564 bp
D-loop1,053 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.56% | −0.181 | −0.158 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 52.82% | −0.225 | −0.095 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.78% | −0.169 | −0.083 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.68% | −0.167 | +0.022 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 37.58% | −0.516 | +0.165 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.59% | −0.298 | −0.061 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 47.70% | −0.155 | −0.107 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 45.85% | −0.200 | −0.132 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.83% | −0.243 | −0.101 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 46.96% | −0.223 | −0.130 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 46.08% | −0.208 | −0.051 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 50.00% | −0.303 | +0.295 | |||||
| CYTBCytochrome b | 1,141 bp | 48.29% | −0.252 | −0.092 | |||||
| 12S rRNA12S ribosomal RNA | 959 bp | 50.57% | −0.047 | +0.207 | |||||
| 16S rRNA16S ribosomal RNA | 1,681 bp | 46.04% | −0.021 | +0.217 | |||||
| D-loopControl region (D-loop) | 1,053 bp | 36.47% | −0.167 | −0.007 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU97
UUC128
Leu L16.5%
UUA95
UUG58
CUU139
CUC128
CUA124
CUG85
Ile I6.4%
AUU150
AUC93
Met M4.6%
AUA83
AUG92
Val V6.9%
GUU79
GUC45
GUA91
GUG47
Ser S6.3%
UCU42
UCC61
UCA69
UCG16
AGU10
AGC42
Pro P5.6%
CCU66
CCC57
CCA72
CCG19
Thr T7.9%
ACU58
ACC114
ACA97
ACG33
Ala A9.4%
GCU69
GCC136
GCA109
GCG43
Tyr Y3.0%
UAU59
UAC56
His H2.8%
CAU31
CAC74
Gln Q2.5%
CAA67
CAG29
Asn N3.0%
AAU49
AAC66
Lys K2.0%
AAA48
AAG29
Asp D1.9%
GAU21
GAC53
Glu E2.6%
GAA55
GAG45
Cys C0.7%
UGU9
UGC17
Trp W3.2%
UGA76
UGG44
Arg R2.0%
CGU15
CGC14
CGA33
CGG16
Gly G6.4%
GGU35
GGC73
GGA72
GGG65
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_084094.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,028 | 959 bp | + | 50.6% |
| tRNA-Val | Transfer RNA | 1,029 | 1,100 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,101 | 2,781 | 1,681 bp | + | 46.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,782 | 2,857 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,859 | 3,833 | 975 bp | + | 50.6% |
| tRNA-Ile | Transfer RNA | 3,838 | 3,908 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,908 | 3,978 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,980 | 4,048 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,049 | 5,093 | 1,045 bp | + | 52.8% |
| tRNA-Trp | Transfer RNA | 5,094 | 5,164 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,166 | 5,234 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,236 | 5,308 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,407 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,408 | 5,478 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,480 | 7,030 | 1,551 bp | + | 43.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,031 | 7,101 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,105 | 7,178 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,185 | 7,875 | 691 bp | + | 41.7% |
| tRNA-Lys | Transfer RNA | 7,876 | 7,951 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,953 | 8,117 | 165 bp | + | 37.6% |
| ATP6 | Protein-coding gene | 8,111 | 8,794 | 684 bp | + | 44.6% |
| COX3 | Protein-coding gene | 8,794 | 9,577 | 784 bp | + | 47.7% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,649 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 45.9% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,068 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 49.8% |
| ND4 | Protein-coding gene | 10,359 | 11,740 | 1,382 bp | + | 47.0% |
| tRNA-His | Transfer RNA | 11,741 | 11,809 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,810 | 11,878 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,880 | 11,952 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,953 | 13,788 | 1,836 bp | + | 46.1% |
| ND6 | Protein-coding gene | 13,785 | 14,306 | 522 bp | − | 50.0% |
| tRNA-Glu | Transfer RNA | 14,307 | 14,375 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,380 | 15,520 | 1,141 bp | + | 48.3% |
| tRNA-Thr | Transfer RNA | 15,521 | 15,591 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,591 | 15,661 | 71 bp | − | – |
| D-loop | Control region | 15,662 | 16,714 | 1,053 bp | – | 36.5% |