Notropis hudsonius
Spottail shiner
GC content
44.31%
Whole genome
Non-coding
1,113 bp
D-loop 1,032 bp
Where Spottail shiner sits among 2,335 species
Whole-genome GC content against maximum lifespan. Spottail shiner has the 2,033rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,715 bp
- GC skew (G − C) / (G + C)
- −0.190
- AT skew (A − T) / (A + T)
- +0.011
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,715 bp
Protein-coding11,403 bp
12S rRNA958 bp
16S rRNA1,684 bp
All tRNA1,557 bp
D-loop1,032 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.23% | −0.247 | −0.094 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.13% | −0.328 | −0.004 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.23% | −0.151 | −0.094 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.55% | −0.197 | +0.028 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 41.21% | −0.382 | +0.113 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.13% | −0.288 | −0.064 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.26% | −0.193 | −0.057 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.41% | −0.213 | −0.103 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 43.77% | −0.231 | −0.114 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 44.21% | −0.250 | −0.051 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 42.97% | −0.245 | −0.026 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.32% | −0.320 | +0.273 | |||||
| CYTBCytochrome b | 1,141 bp | 45.22% | −0.283 | −0.094 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 50.10% | −0.071 | +0.230 | |||||
| 16S rRNA16S ribosomal RNA | 1,684 bp | 45.25% | −0.021 | +0.223 | |||||
| D-loopControl region (D-loop) | 1,032 bp | 36.82% | −0.163 | −0.018 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU106
UUC122
Leu L16.5%
UUA126
UUG42
CUU152
CUC100
CUA158
CUG49
Ile I7.0%
AUU164
AUC102
Met M4.7%
AUA120
AUG59
Val V6.4%
GUU71
GUC45
GUA92
GUG35
Ser S6.3%
UCU53
UCC49
UCA70
UCG13
AGU16
AGC39
Pro P5.6%
CCU60
CCC50
CCA83
CCG20
Thr T7.8%
ACU62
ACC103
ACA112
ACG18
Ala A9.4%
GCU61
GCC140
GCA119
GCG37
Tyr Y3.0%
UAU60
UAC54
His H2.8%
CAU40
CAC65
Gln Q2.6%
CAA72
CAG27
Asn N2.9%
AAU53
AAC57
Lys K2.0%
AAA53
AAG25
Asp D2.0%
GAU28
GAC48
Glu E2.7%
GAA71
GAG30
Cys C0.7%
UGU12
UGC14
Trp W3.2%
UGA95
UGG25
Arg R2.0%
CGU11
CGC15
CGA41
CGG9
Gly G6.4%
GGU41
GGC63
GGA92
GGG49
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_037014.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,027 | 958 bp | + | 50.1% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,783 | 1,684 bp | + | 45.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,859 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,861 | 3,835 | 975 bp | + | 45.2% |
| tRNA-Ile | Transfer RNA | 3,840 | 3,910 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,910 | 3,982 | 73 bp | − | – |
| tRNA-Met | Transfer RNA | 3,982 | 4,050 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,051 | 5,095 | 1,045 bp | + | 48.1% |
| tRNA-Trp | Transfer RNA | 5,096 | 5,166 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,168 | 5,236 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,238 | 5,310 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,406 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,408 | 5,478 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,480 | 7,030 | 1,551 bp | + | 42.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,031 | 7,101 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,103 | 7,175 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,183 | 7,873 | 691 bp | + | 42.6% |
| tRNA-Lys | Transfer RNA | 7,874 | 7,949 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,951 | 8,115 | 165 bp | + | 41.2% |
| ATP6 | Protein-coding gene | 8,109 | 8,792 | 684 bp | + | 43.1% |
| COX3 | Protein-coding gene | 8,792 | 9,575 | 784 bp | + | 44.3% |
| tRNA-Gly | Transfer RNA | 9,576 | 9,647 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,648 | 9,996 | 349 bp | + | 44.4% |
| tRNA-Arg | Transfer RNA | 9,997 | 10,065 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,066 | 10,362 | 297 bp | + | 43.8% |
| ND4 | Protein-coding gene | 10,356 | 11,737 | 1,382 bp | + | 44.2% |
| tRNA-His | Transfer RNA | 11,738 | 11,806 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,874 | 66 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,877 | 11,949 | 73 bp | − | – |
| ND5 | Protein-coding gene | 11,950 | 13,785 | 1,836 bp | + | 43.0% |
| ND6 | Protein-coding gene | 13,782 | 14,303 | 522 bp | − | 47.3% |
| tRNA-Glu | Transfer RNA | 14,304 | 14,372 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,378 | 15,518 | 1,141 bp | + | 45.2% |
| tRNA-Thr | Transfer RNA | 15,519 | 15,591 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,590 | 15,659 | 70 bp | − | – |
| D-loop | Control region | 15,660 | 16,691 | 1,032 bp | – | 36.8% |