Notropis maculatus
Taillight shiner
GC content
43.45%
Whole genome
Non-coding
1,105 bp
D-loop 1,051 bp
Where Taillight shiner sits among 2,335 species
Whole-genome GC content against maximum lifespan. Taillight shiner has the 2,316th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,701 bp
- GC skew (G − C) / (G + C)
- −0.267
- AT skew (A − T) / (A + T)
- +0.069
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,701 bp
Protein-coding11,403 bp
12S rRNA957 bp
16S rRNA1,675 bp
All tRNA1,561 bp
D-loop1,051 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.92% | −0.356 | −0.013 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 43.73% | −0.457 | +0.075 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.33% | −0.208 | −0.053 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.25% | −0.263 | +0.079 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 35.15% | −0.552 | +0.140 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.11% | −0.389 | −0.040 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.30% | −0.240 | −0.012 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.41% | −0.303 | −0.052 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.12% | −0.313 | −0.043 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 42.91% | −0.369 | +0.006 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 41.72% | −0.368 | +0.079 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.83% | −0.419 | +0.382 | |||||
| CYTBCytochrome b | 1,141 bp | 43.91% | −0.333 | −0.009 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 50.26% | −0.094 | +0.218 | |||||
| 16S rRNA16S ribosomal RNA | 1,675 bp | 43.64% | −0.078 | +0.261 | |||||
| D-loopControl region (D-loop) | 1,051 bp | 36.35% | −0.220 | +0.031 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU105
UUC127
Leu L16.5%
UUA134
UUG15
CUU136
CUC99
CUA203
CUG42
Ile I7.8%
AUU166
AUC130
Met M4.5%
AUA128
AUG45
Val V5.4%
GUU46
GUC39
GUA93
GUG28
Ser S6.2%
UCU38
UCC63
UCA80
UCG4
AGU12
AGC40
Pro P5.6%
CCU50
CCC67
CCA89
CCG7
Thr T8.6%
ACU57
ACC123
ACA137
ACG9
Ala A8.7%
GCU57
GCC134
GCA128
GCG13
Tyr Y3.0%
UAU34
UAC82
His H2.8%
CAU32
CAC73
Gln Q2.6%
CAA85
CAG13
Asn N3.1%
AAU56
AAC63
Lys K2.1%
AAA68
AAG12
Asp D1.9%
GAU33
GAC40
Glu E2.7%
GAA80
GAG23
Cys C0.7%
UGU10
UGC16
Trp W3.1%
UGA101
UGG18
Arg R2.0%
CGU13
CGC14
CGA42
CGG6
Gly G6.3%
GGU32
GGC70
GGA102
GGG36
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_084091.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,026 | 957 bp | + | 50.3% |
| tRNA-Val | Transfer RNA | 1,027 | 1,098 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,099 | 2,773 | 1,675 bp | + | 43.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,774 | 2,849 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,851 | 3,825 | 975 bp | + | 44.9% |
| tRNA-Ile | Transfer RNA | 3,830 | 3,900 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,900 | 3,970 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,040 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,041 | 5,085 | 1,045 bp | + | 43.7% |
| tRNA-Trp | Transfer RNA | 5,086 | 5,156 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,158 | 5,226 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,228 | 5,300 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,331 | 5,399 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,400 | 5,469 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,471 | 7,021 | 1,551 bp | + | 43.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,022 | 7,092 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,096 | 7,168 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,175 | 7,865 | 691 bp | + | 41.3% |
| tRNA-Lys | Transfer RNA | 7,866 | 7,941 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,943 | 8,107 | 165 bp | + | 35.2% |
| ATP6 | Protein-coding gene | 8,101 | 8,784 | 684 bp | + | 42.1% |
| COX3 | Protein-coding gene | 8,784 | 9,567 | 784 bp | + | 46.3% |
| tRNA-Gly | Transfer RNA | 9,568 | 9,639 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,640 | 9,988 | 349 bp | + | 44.4% |
| tRNA-Arg | Transfer RNA | 9,989 | 10,057 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,058 | 10,354 | 297 bp | + | 45.1% |
| ND4 | Protein-coding gene | 10,348 | 11,729 | 1,382 bp | + | 42.9% |
| tRNA-His | Transfer RNA | 11,730 | 11,798 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,799 | 11,867 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,869 | 11,941 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,942 | 13,777 | 1,836 bp | + | 41.7% |
| ND6 | Protein-coding gene | 13,774 | 14,295 | 522 bp | − | 44.8% |
| tRNA-Glu | Transfer RNA | 14,296 | 14,364 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,369 | 15,509 | 1,141 bp | + | 43.9% |
| tRNA-Thr | Transfer RNA | 15,510 | 15,581 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,581 | 15,650 | 70 bp | − | – |
| D-loop | Control region | 15,651 | 16,701 | 1,051 bp | – | 36.4% |