Notropis texanus
Weed shiner
GC content
42.95%
Whole genome
Non-coding
1,104 bp
D-loop 1,049 bp
Where Weed shiner sits among 2,335 species
Whole-genome GC content against maximum lifespan. Weed shiner has the 2,210th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,705 bp
- GC skew (G − C) / (G + C)
- −0.213
- AT skew (A − T) / (A + T)
- +0.033
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,705 bp
Protein-coding11,403 bp
12S rRNA957 bp
16S rRNA1,679 bp
All tRNA1,562 bp
D-loop1,049 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.72% | −0.248 | −0.080 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 44.50% | −0.363 | +0.045 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 41.91% | −0.157 | −0.088 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.23% | −0.194 | +0.027 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 38.18% | −0.492 | +0.157 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 39.62% | −0.328 | −0.056 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 43.24% | −0.198 | −0.052 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 41.83% | −0.219 | −0.094 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 43.10% | −0.313 | −0.053 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 41.46% | −0.281 | −0.058 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 41.61% | −0.304 | +0.013 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.68% | −0.421 | +0.374 | |||||
| CYTBCytochrome b | 1,141 bp | 42.68% | −0.298 | −0.049 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 49.84% | −0.061 | +0.221 | |||||
| 16S rRNA16S ribosomal RNA | 1,679 bp | 44.43% | −0.059 | +0.250 | |||||
| D-loopControl region (D-loop) | 1,049 bp | 36.89% | −0.194 | +0.015 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU116
UUC108
Leu L16.5%
UUA154
UUG26
CUU159
CUC92
CUA168
CUG27
Ile I7.1%
AUU188
AUC81
Met M4.7%
AUA126
AUG52
Val V6.3%
GUU77
GUC41
GUA97
GUG26
Ser S6.3%
UCU51
UCC49
UCA77
UCG9
AGU17
AGC38
Pro P5.6%
CCU58
CCC46
CCA96
CCG14
Thr T8.0%
ACU70
ACC93
ACA130
ACG10
Ala A9.1%
GCU66
GCC135
GCA130
GCG16
Tyr Y3.0%
UAU58
UAC58
His H2.7%
CAU41
CAC63
Gln Q2.5%
CAA79
CAG18
Asn N2.9%
AAU52
AAC58
Lys K2.1%
AAA60
AAG20
Asp D2.0%
GAU32
GAC46
Glu E2.7%
GAA76
GAG25
Cys C0.7%
UGU12
UGC16
Trp W3.2%
UGA104
UGG16
Arg R2.0%
CGU13
CGC10
CGA46
CGG8
Gly G6.4%
GGU41
GGC59
GGA100
GGG44
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_084092.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,026 | 957 bp | + | 49.8% |
| tRNA-Val | Transfer RNA | 1,027 | 1,098 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,099 | 2,777 | 1,679 bp | + | 44.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,778 | 2,853 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 44.7% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,904 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,904 | 3,974 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,976 | 4,044 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,089 | 1,045 bp | + | 44.5% |
| tRNA-Trp | Transfer RNA | 5,090 | 5,160 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,162 | 5,230 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,232 | 5,304 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,335 | 5,402 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,403 | 5,472 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,474 | 7,024 | 1,551 bp | + | 41.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,025 | 7,095 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,099 | 7,172 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,179 | 7,869 | 691 bp | + | 40.2% |
| tRNA-Lys | Transfer RNA | 7,870 | 7,945 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,947 | 8,111 | 165 bp | + | 38.2% |
| ATP6 | Protein-coding gene | 8,105 | 8,788 | 684 bp | + | 39.6% |
| COX3 | Protein-coding gene | 8,788 | 9,571 | 784 bp | + | 43.2% |
| tRNA-Gly | Transfer RNA | 9,572 | 9,643 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,644 | 9,992 | 349 bp | + | 41.8% |
| tRNA-Arg | Transfer RNA | 9,993 | 10,061 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,062 | 10,358 | 297 bp | + | 43.1% |
| ND4 | Protein-coding gene | 10,352 | 11,733 | 1,382 bp | + | 41.5% |
| tRNA-His | Transfer RNA | 11,734 | 11,802 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,803 | 11,871 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,873 | 11,945 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,946 | 13,781 | 1,836 bp | + | 41.6% |
| ND6 | Protein-coding gene | 13,778 | 14,299 | 522 bp | − | 43.7% |
| tRNA-Glu | Transfer RNA | 14,300 | 14,368 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,374 | 15,514 | 1,141 bp | + | 42.7% |
| tRNA-Thr | Transfer RNA | 15,515 | 15,586 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,586 | 15,656 | 71 bp | − | – |
| D-loop | Control region | 15,657 | 16,705 | 1,049 bp | – | 36.9% |