Noturus albater
Ozark madtom
GC content
42.74%
Whole genome
Non-coding
975 bp
D-loop 512 bp
Where Ozark madtom sits among 2,335 species
Whole-genome GC content against maximum lifespan. Ozark madtom has the 2,215th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,496 bp
- GC skew (G − C) / (G + C)
- −0.272
- AT skew (A − T) / (A + T)
- +0.035
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,496 bp
Protein-coding11,382 bp
12S rRNA947 bp
16S rRNA1,642 bp
All tRNA1,553 bp
D-loop512 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.10% | −0.353 | −0.061 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 43.64% | −0.443 | +0.107 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.26% | −0.174 | −0.082 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.96% | −0.237 | 0.000 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 39.29% | −0.394 | +0.176 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 39.91% | −0.392 | −0.012 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.20% | −0.256 | −0.114 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 41.55% | −0.352 | −0.039 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.47% | −0.391 | −0.057 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.14% | −0.354 | −0.006 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 39.36% | −0.354 | +0.013 | |||||
| ND6NADH dehydrogenase subunit 6 | 516 bp | 44.38% | −0.581 | +0.401 | |||||
| CYTBCytochrome b | 1,138 bp | 44.90% | −0.339 | −0.081 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 48.47% | −0.089 | +0.135 | |||||
| 16S rRNA16S ribosomal RNA | 1,642 bp | 43.73% | −0.100 | +0.219 | |||||
| D-loopControl region (D-loop) | 512 bp | 43.44% | −0.198 | −0.031 |
Codon usage
Counts per codon, darker is more frequent3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU127
UUC96
Leu L16.8%
UUA159
UUG22
CUU101
CUC106
CUA220
CUG29
Ile I8.0%
AUU214
AUC89
Met M4.7%
AUA146
AUG33
Val V5.7%
GUU72
GUC28
GUA91
GUG25
Ser S6.0%
UCU42
UCC70
UCA62
UCG8
AGU14
AGC31
Pro P5.6%
CCU48
CCC97
CCA58
CCG9
Thr T7.8%
ACU61
ACC119
ACA107
ACG10
Ala A8.6%
GCU56
GCC161
GCA99
GCG12
Tyr Y3.0%
UAU65
UAC49
His H2.8%
CAU40
CAC68
Gln Q2.6%
CAA87
CAG12
Asn N3.3%
AAU62
AAC62
Lys K2.1%
AAA70
AAG11
Asp D1.9%
GAU28
GAC46
Glu E2.6%
GAA84
GAG14
Cys C0.8%
UGU13
UGC16
Trp W3.2%
UGA96
UGG26
Arg R2.0%
CGU3
CGC17
CGA42
CGG13
Gly G6.5%
GGU36
GGC83
GGA88
GGG39
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_086506.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,016 | 947 bp | + | 48.5% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,111 | 2,752 | 1,642 bp | + | 43.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,751 | 2,825 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,826 | 3,800 | 975 bp | + | 44.1% |
| tRNA-Ile | Transfer RNA | 3,802 | 3,873 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,873 | 3,943 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,943 | 4,011 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,012 | 5,056 | 1,045 bp | + | 43.6% |
| tRNA-Trp | Transfer RNA | 5,057 | 5,127 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,130 | 5,198 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,200 | 5,272 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,304 | 5,369 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,372 | 5,441 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,443 | 6,993 | 1,551 bp | + | 43.3% |
| tRNA-Ser (UCN) | Transfer RNA | 6,994 | 7,064 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,069 | 7,139 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,154 | 7,844 | 691 bp | + | 41.0% |
| tRNA-Lys | Transfer RNA | 7,845 | 7,918 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,920 | 8,087 | 168 bp | + | 39.3% |
| ATP6 | Protein-coding gene | 8,078 | 8,761 | 684 bp | + | 39.9% |
| COX3 | Protein-coding gene | 8,761 | 9,545 | 785 bp | + | 44.2% |
| tRNA-Gly | Transfer RNA | 9,545 | 9,616 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,617 | 9,965 | 349 bp | + | 41.6% |
| tRNA-Arg | Transfer RNA | 9,966 | 10,036 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,037 | 10,333 | 297 bp | + | 46.5% |
| ND4 | Protein-coding gene | 10,327 | 11,707 | 1,381 bp | + | 42.1% |
| tRNA-His | Transfer RNA | 11,708 | 11,777 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,778 | 11,844 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,846 | 11,918 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,919 | 13,742 | 1,824 bp | + | 39.4% |
| ND6 | Protein-coding gene | 13,739 | 14,254 | 516 bp | − | 44.4% |
| tRNA-Glu | Transfer RNA | 14,255 | 14,323 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,325 | 15,462 | 1,138 bp | + | 44.9% |
| tRNA-Thr | Transfer RNA | 15,463 | 15,534 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,533 | 15,602 | 70 bp | − | – |
| D-loop | Control region | 15,914 | 16,425 | 512 bp | – | 43.4% |