Numenius phaeopus
Whimbrel
GC content
43.66%
Whole genome
Non-coding
1,609 bp
D-loop 1,524 bp
Where Whimbrel sits among 2,335 species
Whole-genome GC content against maximum lifespan. Whimbrel has the 674th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome17,091 bp
- GC skew (G − C) / (G + C)
- −0.367
- AT skew (A − T) / (A + T)
- +0.098
Life history
- Maximum lifespan
- 24.2 years
- Adult weight
- 365.7 g
- Birth weight
- 35 g
- Female sexual maturity
- 2 years
- Male sexual maturity
- 2 years
- Gestation or incubation
- 22 days
- Litter or clutch size
- 4
- Litters per year
- 1
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 00547)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,091 bp
Protein-coding11,375 bp
12S rRNA975 bp
16S rRNA1,595 bp
All tRNA1,552 bp
D-loop1,524 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 44.27% | −0.404 | −0.028 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,039 bp | 41.87% | −0.517 | +0.089 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.97% | −0.279 | −0.017 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 44.30% | −0.333 | +0.097 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.794 | +0.220 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.44% | −0.533 | +0.021 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.77% | −0.293 | +0.012 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 44.73% | −0.439 | +0.062 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 43.10% | −0.375 | +0.018 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,377 bp | 44.15% | −0.493 | +0.092 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,815 bp | 43.75% | −0.469 | +0.128 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.02% | −0.591 | +0.575 | |||||
| CYTBCytochrome b | 1,143 bp | 44.88% | −0.446 | +0.038 | |||||
| 12S rRNA12S ribosomal RNA | 975 bp | 45.44% | −0.138 | +0.188 | |||||
| 16S rRNA16S ribosomal RNA | 1,595 bp | 43.07% | −0.156 | +0.209 | |||||
| D-loopControl region (D-loop) | 1,524 bp | 41.01% | −0.386 | +0.050 |
Codon usage
Counts per codon, darker is more frequent3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU73
UUC154
Leu L17.6%
UUA107
UUG27
CUU85
CUC126
CUA284
CUG39
Ile I7.4%
AUU101
AUC180
Met M4.6%
AUA135
AUG41
Val V4.4%
GUU42
GUC46
GUA59
GUG19
Ser S7.4%
UCU45
UCC82
UCA93
UCG7
AGU10
AGC45
Pro P5.7%
CCU45
CCC59
CCA103
CCG8
Thr T9.6%
ACU68
ACC154
ACA140
ACG4
Ala A7.7%
GCU74
GCC117
GCA99
GCG3
Tyr Y3.0%
UAU44
UAC71
His H2.7%
CAU31
CAC72
Gln Q2.5%
CAA84
CAG11
Asn N3.5%
AAU30
AAC101
Lys K2.3%
AAA72
AAG14
Asp D1.6%
GAU12
GAC50
Glu E2.5%
GAA78
GAG17
Cys C0.7%
UGU10
UGC18
Trp W2.8%
UGA94
UGG13
Arg R1.9%
CGU15
CGC18
CGA33
CGG5
Gly G5.8%
GGU38
GGC58
GGA80
GGG43
Stop 0.3%
UAA7
UAG1
AGA1
AGG2
Genome map
38 annotated features in NC_030507.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 72 | 72 bp | + | – |
| 12S rRNA | Ribosomal RNA | 73 | 1,047 | 975 bp | + | 45.4% |
| tRNA-Val | Transfer RNA | 1,048 | 1,119 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,120 | 2,714 | 1,595 bp | + | 43.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,715 | 2,788 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,801 | 3,778 | 978 bp | + | 44.3% |
| tRNA-Ile | Transfer RNA | 3,779 | 3,848 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,862 | 3,932 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,931 | 3,999 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,001 | 5,039 | 1,039 bp | + | 41.9% |
| tRNA-Trp | Transfer RNA | 5,040 | 5,109 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,111 | 5,179 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,182 | 5,255 | 74 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,258 | 5,324 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,324 | 5,394 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,396 | 6,946 | 1,551 bp | + | 46.0% |
| tRNA-Ser (UCN) | Transfer RNA | 6,932 | 7,011 | 80 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,014 | 7,082 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,084 | 7,767 | 684 bp | + | 44.3% |
| tRNA-Lys | Transfer RNA | 7,769 | 7,838 | 70 bp | + | – |
| ATP8 | Protein-coding gene | 7,840 | 8,007 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 7,998 | 8,681 | 684 bp | + | 44.4% |
| COX3 | Protein-coding gene | 8,681 | 9,464 | 784 bp | + | 44.8% |
| tRNA-Gly | Transfer RNA | 9,465 | 9,533 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,534 | 9,884 | 351 bp | + | 44.7% |
| tRNA-Arg | Transfer RNA | 9,889 | 9,958 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,959 | 10,255 | 297 bp | + | 43.1% |
| ND4 | Protein-coding gene | 10,249 | 11,625 | 1,377 bp | + | 44.2% |
| tRNA-His | Transfer RNA | 11,627 | 11,695 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,697 | 11,760 | 64 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,761 | 11,830 | 70 bp | + | – |
| ND5 | Protein-coding gene | 11,831 | 13,645 | 1,815 bp | + | 43.8% |
| CYTB | Protein-coding gene | 13,656 | 14,798 | 1,143 bp | + | 44.9% |
| tRNA-Thr | Transfer RNA | 14,801 | 14,872 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,894 | 14,963 | 70 bp | − | – |
| ND6 | Protein-coding gene | 14,970 | 15,491 | 522 bp | − | 45.0% |
| tRNA-Glu | Transfer RNA | 15,495 | 15,567 | 73 bp | − | – |
| D-loop | Control region | 15,568 | 17,091 | 1,524 bp | – | 41.0% |