MitoAge

Nyctereutes procyonoides

Raccoon dog

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Maximum lifespan
16.6 yr
AnAge record
mtDNA size
16,713 bp
RefSeq NC_013700.1
GC content
40.94%
Whole genome
Non-coding
1,331 bp
D-loop 1,246 bp

Where Raccoon dog sits among 2,335 species

Whole-genome GC content against maximum lifespan. Raccoon dog has the 1,129th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Raccoon dog
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,713 bp
GC skew (G − C) / (G + C)
−0.305
AT skew (A − T) / (A + T)
+0.087

Life history

Maximum lifespan
16.6 years
Adult weight
6.5 kg
Birth weight
75 g
Body temperature
38 °C
Female sexual maturity
304 days
Male sexual maturity
304 days
Gestation or incubation
61 days
Litter or clutch size
6
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02086)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,713 bp
Protein-coding11,339 bp
12S rRNA954 bp
16S rRNA1,578 bp
All tRNA1,511 bp
D-loop1,246 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp29.7%27.0%12.7%30.6%43.31%−0.415+0.048
ND2NADH dehydrogenase subunit 21,042 bp34.6%25.8%10.5%29.1%39.54%−0.471+0.146
COX1Cytochrome c oxidase subunit I1,545 bp27.4%30.0%17.9%24.7%42.52%−0.160−0.045
COX2Cytochrome c oxidase subunit II684 bp32.3%26.3%14.6%26.8%41.37%−0.293+0.102
ATP8ATP synthase F0 subunit 8204 bp38.2%28.4%6.9%26.5%33.33%−0.588+0.147
ATP6ATP synthase F0 subunit 6681 bp28.3%29.4%11.9%30.4%42.29%−0.438−0.018
COX3Cytochrome c oxidase subunit III784 bp26.5%29.6%15.6%28.3%43.88%−0.291−0.055
ND3NADH dehydrogenase subunit 3347 bp30.3%27.1%14.4%28.2%42.65%−0.324+0.055
ND4LNADH dehydrogenase subunit 4L297 bp30.3%30.3%13.1%26.3%39.39%−0.3330.000
ND4NADH dehydrogenase subunit 41,378 bp31.6%27.9%12.0%28.6%40.57%−0.410+0.062
ND5NADH dehydrogenase subunit 51,821 bp32.1%28.8%11.1%28.0%39.15%−0.431+0.054
ND6NADH dehydrogenase subunit 6528 bp39.8%21.4%9.8%29.0%38.83%−0.493+0.300
CYTBCytochrome b1,140 bp29.6%27.9%13.8%28.8%42.54%−0.353+0.029
12S rRNA12S ribosomal RNA954 bp36.8%22.3%17.7%23.2%40.88%−0.133+0.245
16S rRNA16S ribosomal RNA1,578 bp36.7%24.4%17.7%21.2%38.91%−0.091+0.201
D-loopControl region (D-loop)1,246 bp30.4%24.1%15.1%30.4%45.51%−0.337+0.116

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU101
UUC134
Leu L15.4%
UUA118
UUG18
CUU77
CUC92
CUA231
CUG51
Ile I8.8%
AUU156
AUC177
Met M6.6%
AUA198
AUG52
Val V5.0%
GUU34
GUC48
GUA78
GUG30
Ser S7.5%
UCU46
UCC93
UCA87
UCG8
AGU19
AGC32
Pro P5.1%
CCU44
CCC55
CCA87
CCG9
Thr T8.2%
ACU76
ACC98
ACA119
ACG17
Ala A6.7%
GCU34
GCC110
GCA96
GCG13
Tyr Y3.7%
UAU61
UAC80
His H2.5%
CAU32
CAC64
Gln Q2.4%
CAA80
CAG11
Asn N4.0%
AAU52
AAC101
Lys K2.6%
AAA85
AAG14
Asp D1.8%
GAU19
GAC49
Glu E2.5%
GAA68
GAG26
Cys C0.6%
UGU7
UGC17
Trp W2.7%
UGA93
UGG11
Arg R1.7%
CGU8
CGC10
CGA37
CGG11
Gly G5.7%
GGU34
GGC52
GGA100
GGG32
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_013700.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,023954 bp+40.9%
tRNA-ValTransfer RNA1,0241,09067 bp+–
16S rRNARibosomal RNA1,0912,6681,578 bp+38.9%
tRNA-Leu (UUR)Transfer RNA2,6692,74375 bp+–
ND1Protein-coding gene2,7463,701956 bp+43.3%
tRNA-IleTransfer RNA3,7023,77069 bp+–
tRNA-GlnTransfer RNA3,7683,84174 bp+–
tRNA-MetTransfer RNA3,8433,91270 bp+–
ND2Protein-coding gene3,9134,9541,042 bp+39.5%
tRNA-TrpTransfer RNA4,9555,02268 bp+–
tRNA-AlaTransfer RNA5,0345,10269 bp+–
tRNA-AsnTransfer RNA5,1045,17572 bp+–
tRNA-CysTransfer RNA5,2105,27768 bp+–
tRNA-TyrTransfer RNA5,2785,34568 bp+–
COX1Protein-coding gene5,3476,8911,545 bp+42.5%
tRNA-Ser (UCN)Transfer RNA6,8996,96769 bp+–
tRNA-AspTransfer RNA6,9747,04168 bp+–
COX2Protein-coding gene7,0427,725684 bp+41.4%
tRNA-LysTransfer RNA7,7437,80967 bp+–
ATP8Protein-coding gene7,8118,014204 bp+33.3%
ATP6Protein-coding gene7,9728,652681 bp+42.3%
COX3Protein-coding gene8,6529,435784 bp+43.9%
tRNA-GlyTransfer RNA9,4369,50368 bp+–
ND3Protein-coding gene9,5049,850347 bp+42.7%
tRNA-ArgTransfer RNA9,8519,91969 bp+–
ND4LProtein-coding gene9,92010,216297 bp+39.4%
ND4Protein-coding gene10,21011,5871,378 bp+40.6%
tRNA-HisTransfer RNA11,58811,65669 bp+–
tRNA-Ser (AGY)Transfer RNA11,65711,71761 bp+–
tRNA-Leu (CUN)Transfer RNA11,71811,78770 bp+–
ND5Protein-coding gene11,78813,6081,821 bp+39.2%
ND6Protein-coding gene13,59214,119528 bp−38.8%
tRNA-GluTransfer RNA14,12014,18970 bp+–
CYTBProtein-coding gene14,19415,3331,140 bp+42.5%
tRNA-ThrTransfer RNA15,33415,40269 bp+–
tRNA-ProTransfer RNA15,40215,46766 bp+–
D-loopControl region15,46816,7131,246 bp–45.5%

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