MitoAge

Oncorhynchus clarkii

Cutthroat trout

Add to compare Download FASTA
Maximum lifespan
10 yr
AnAge record
mtDNA size
16,658 bp
RefSeq NC_006897.1
GC content
46.10%
Whole genome
Non-coding
1,070 bp
D-loop 1,003 bp

Where Cutthroat trout sits among 2,335 species

Whole-genome GC content against maximum lifespan. Cutthroat trout has the 1,561st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Cutthroat trout
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,658 bp
GC skew (G − C) / (G + C)
−0.254
AT skew (A − T) / (A + T)
+0.028

Life history

Maximum lifespan
10 years
Adult weight
10.2 kg
Female sexual maturity
3 years
Male sexual maturity
3 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04461)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,658 bp
Protein-coding11,412 bp
12S rRNA947 bp
16S rRNA1,677 bp
All tRNA1,552 bp
D-loop1,003 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp23.6%28.4%17.3%30.7%48.00%−0.278−0.093
ND2NADH dehydrogenase subunit 21,050 bp27.4%26.4%13.3%32.9%46.19%−0.423+0.019
COX1Cytochrome c oxidase subunit I1,551 bp25.1%29.9%18.1%26.9%45.00%−0.195−0.088
COX2Cytochrome c oxidase subunit II691 bp27.5%28.5%16.5%27.5%43.99%−0.250−0.018
ATP8ATP synthase F0 subunit 8168 bp29.8%25.6%12.5%32.1%44.64%−0.440+0.075
ATP6ATP synthase F0 subunit 6684 bp25.1%29.5%13.6%31.7%45.32%−0.400−0.080
COX3Cytochrome c oxidase subunit III785 bp24.1%29.6%17.2%29.2%46.37%−0.258−0.102
ND3NADH dehydrogenase subunit 3350 bp24.9%29.4%14.3%31.4%45.71%−0.375−0.084
ND4LNADH dehydrogenase subunit 4L297 bp23.6%26.9%16.8%32.7%49.50%−0.320−0.067
ND4NADH dehydrogenase subunit 41,381 bp26.6%28.0%15.1%30.3%45.40%−0.337−0.027
ND5NADH dehydrogenase subunit 51,839 bp28.1%26.4%14.3%31.3%45.57%−0.372+0.031
ND6NADH dehydrogenase subunit 6522 bp35.8%13.4%14.6%36.2%50.77%−0.426+0.455
CYTBCytochrome b1,141 bp24.5%29.6%15.8%30.1%45.93%−0.313−0.096
12S rRNA12S ribosomal RNA947 bp30.3%19.6%22.7%27.3%50.05%−0.093+0.214
16S rRNA16S ribosomal RNA1,677 bp32.4%19.6%23.0%25.0%48.00%−0.043+0.248
D-loopControl region (D-loop)1,003 bp30.8%30.6%15.2%23.4%38.58%−0.214+0.003

Codon usage

Counts per codon, darker is more frequent

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%
UUU108
UUC118
Leu L17.2%
UUA105
UUG30
CUU151
CUC146
CUA173
CUG52
Ile I7.0%
AUU138
AUC129
Met M3.9%
AUA104
AUG46
Val V6.0%
GUU59
GUC54
GUA81
GUG34
Ser S6.3%
UCU53
UCC69
UCA61
UCG4
AGU12
AGC40
Pro P5.6%
CCU55
CCC86
CCA52
CCG19
Thr T8.1%
ACU79
ACC117
ACA101
ACG13
Ala A9.3%
GCU87
GCC150
GCA85
GCG31
Tyr Y2.9%
UAU33
UAC77
His H2.9%
CAU31
CAC78
Gln Q2.6%
CAA87
CAG13
Asn N3.0%
AAU40
AAC76
Lys K2.0%
AAA61
AAG14
Asp D1.9%
GAU24
GAC50
Glu E2.7%
GAA79
GAG25
Cys C0.7%
UGU7
UGC20
Trp W3.2%
UGA96
UGG25
Arg R2.0%
CGU9
CGC12
CGA47
CGG7
Gly G6.5%
GGU39
GGC70
GGA92
GGG47
Stop 0.2%
UAA5
UAG3
AGA0
AGG0

Genome map

38 annotated features in NC_006897.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,0031,003 bp–38.6%
tRNA-PheTransfer RNA1,0041,07168 bp+–
12S rRNARibosomal RNA1,0722,018947 bp+50.1%
tRNA-ValTransfer RNA2,0192,09072 bp+–
16S rRNARibosomal RNA2,0913,7671,677 bp+48.0%
tRNA-Leu (UUR)Transfer RNA3,7683,84275 bp+–
ND1Protein-coding gene3,8434,817975 bp+48.0%
tRNA-IleTransfer RNA4,8224,89372 bp+–
tRNA-GlnTransfer RNA4,8914,96171 bp−–
tRNA-MetTransfer RNA4,9615,02969 bp+–
ND2Protein-coding gene5,0306,0791,050 bp+46.2%
tRNA-TrpTransfer RNA6,0826,15170 bp+–
tRNA-AlaTransfer RNA6,1546,22269 bp−–
tRNA-AsnTransfer RNA6,2246,29673 bp−–
tRNA-CysTransfer RNA6,3316,39767 bp−–
tRNA-TyrTransfer RNA6,3986,46871 bp−–
COX1Protein-coding gene6,4708,0201,551 bp+45.0%
tRNA-Ser (UCN)Transfer RNA8,0218,09171 bp+–
tRNA-AspTransfer RNA8,0968,16974 bp+–
COX2Protein-coding gene8,1848,874691 bp+44.0%
tRNA-LysTransfer RNA8,8758,94874 bp+–
ATP8Protein-coding gene8,9509,117168 bp+44.6%
ATP6Protein-coding gene9,1089,791684 bp+45.3%
COX3Protein-coding gene9,79110,575785 bp+46.4%
tRNA-GlyTransfer RNA10,57610,64570 bp+–
ND3Protein-coding gene10,64610,995350 bp+45.7%
tRNA-ArgTransfer RNA10,99611,06469 bp+–
ND4LProtein-coding gene11,06511,361297 bp+49.5%
ND4Protein-coding gene11,35512,7351,381 bp+45.4%
tRNA-HisTransfer RNA12,73612,80469 bp+–
tRNA-Ser (AGY)Transfer RNA12,80512,87369 bp+–
tRNA-Leu (CUN)Transfer RNA12,87512,94773 bp+–
ND5Protein-coding gene12,94814,7861,839 bp+45.6%
ND6Protein-coding gene14,78315,304522 bp−50.8%
tRNA-GluTransfer RNA15,30515,37369 bp−–
CYTBProtein-coding gene15,37716,5171,141 bp+45.9%
tRNA-ThrTransfer RNA16,51816,58972 bp+–
tRNA-ProTransfer RNA16,58916,65870 bp−–

Downloads