MitoAge

Oncorhynchus gorbuscha

Pink salmon

Add to compare Download FASTA
Maximum lifespan
3 yr
AnAge record
mtDNA size
16,785 bp
RefSeq NC_010959.1
GC content
45.63%
Whole genome
Non-coding
1,195 bp
D-loop 1,131 bp

Where Pink salmon sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pink salmon has the 2,186th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Pink salmon
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,785 bp
GC skew (G − C) / (G + C)
−0.255
AT skew (A − T) / (A + T)
+0.027

Life history

Maximum lifespan
3 years
Adult weight
3.7 kg
Female sexual maturity
2 years
Male sexual maturity
2 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04462)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,785 bp
Protein-coding11,412 bp
12S rRNA947 bp
16S rRNA1,678 bp
All tRNA1,553 bp
D-loop1,131 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp25.4%28.1%16.3%30.2%46.46%−0.298−0.050
ND2NADH dehydrogenase subunit 21,050 bp28.0%27.8%13.3%30.9%44.19%−0.397+0.003
COX1Cytochrome c oxidase subunit I1,551 bp25.5%28.8%18.4%27.2%45.65%−0.192−0.061
COX2Cytochrome c oxidase subunit II691 bp27.5%28.1%16.4%28.1%44.43%−0.264−0.010
ATP8ATP synthase F0 subunit 8168 bp30.4%25.6%11.9%32.1%44.05%−0.459+0.085
ATP6ATP synthase F0 subunit 6684 bp25.3%29.5%13.0%32.2%45.18%−0.424−0.077
COX3Cytochrome c oxidase subunit III785 bp23.8%28.9%17.7%29.6%47.26%−0.251−0.097
ND3NADH dehydrogenase subunit 3350 bp23.4%29.1%14.6%32.9%47.43%−0.386−0.109
ND4LNADH dehydrogenase subunit 4L297 bp23.9%26.9%16.5%32.7%49.16%−0.329−0.060
ND4NADH dehydrogenase subunit 41,381 bp26.0%28.5%15.3%30.2%45.47%−0.328−0.046
ND5NADH dehydrogenase subunit 51,839 bp29.3%27.0%12.9%30.7%43.67%−0.407+0.041
ND6NADH dehydrogenase subunit 6522 bp36.8%15.5%13.8%33.9%47.70%−0.422+0.407
CYTBCytochrome b1,141 bp24.3%29.5%16.2%30.0%46.19%−0.298−0.098
12S rRNA12S ribosomal RNA947 bp30.1%20.2%22.7%27.0%49.74%−0.087+0.197
16S rRNA16S ribosomal RNA1,678 bp32.4%19.7%22.8%25.1%47.86%−0.049+0.243
D-loopControl region (D-loop)1,131 bp29.1%31.3%16.3%23.3%39.61%−0.179−0.037

Codon usage

Counts per codon, darker is more frequent

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU107
UUC120
Leu L17.2%
UUA111
UUG27
CUU162
CUC140
CUA174
CUG43
Ile I7.4%
AUU136
AUC144
Met M3.9%
AUA99
AUG50
Val V5.8%
GUU55
GUC51
GUA83
GUG31
Ser S6.4%
UCU52
UCC64
UCA64
UCG8
AGU10
AGC44
Pro P5.6%
CCU49
CCC84
CCA56
CCG23
Thr T8.2%
ACU79
ACC114
ACA100
ACG20
Ala A9.1%
GCU80
GCC146
GCA102
GCG17
Tyr Y2.9%
UAU39
UAC71
His H2.8%
CAU27
CAC81
Gln Q2.6%
CAA87
CAG13
Asn N3.0%
AAU39
AAC76
Lys K2.0%
AAA63
AAG12
Asp D1.9%
GAU33
GAC39
Glu E2.7%
GAA85
GAG19
Cys C0.7%
UGU10
UGC17
Trp W3.2%
UGA101
UGG20
Arg R2.0%
CGU13
CGC10
CGA44
CGG9
Gly G6.5%
GGU33
GGC74
GGA93
GGG48
Stop 0.2%
UAA6
UAG2
AGA0
AGG0

Genome map

38 annotated features in NC_010959.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,1311,131 bp–39.6%
tRNA-PheTransfer RNA1,1321,19968 bp+–
12S rRNARibosomal RNA1,2002,146947 bp+49.7%
tRNA-ValTransfer RNA2,1472,21872 bp+–
16S rRNARibosomal RNA2,2193,8961,678 bp+47.9%
tRNA-Leu (UUR)Transfer RNA3,8973,97175 bp+–
ND1Protein-coding gene3,9724,946975 bp+46.5%
tRNA-IleTransfer RNA4,9505,02172 bp+–
tRNA-GlnTransfer RNA5,0195,08971 bp−–
tRNA-MetTransfer RNA5,0895,15769 bp+–
ND2Protein-coding gene5,1586,2071,050 bp+44.2%
tRNA-TrpTransfer RNA6,2106,28980 bp+–
tRNA-AlaTransfer RNA6,2916,35060 bp−–
tRNA-AsnTransfer RNA6,3526,42473 bp−–
tRNA-CysTransfer RNA6,4596,52466 bp−–
tRNA-TyrTransfer RNA6,5256,59571 bp−–
COX1Protein-coding gene6,5978,1471,551 bp+45.7%
tRNA-Ser (UCN)Transfer RNA8,1488,21871 bp−–
tRNA-AspTransfer RNA8,2228,29675 bp+–
COX2Protein-coding gene8,3119,001691 bp+44.4%
tRNA-LysTransfer RNA9,0029,07574 bp+–
ATP8Protein-coding gene9,0779,244168 bp+44.1%
ATP6Protein-coding gene9,2359,918684 bp+45.2%
COX3Protein-coding gene9,91810,702785 bp+47.3%
tRNA-GlyTransfer RNA10,70310,77270 bp+–
ND3Protein-coding gene10,77311,122350 bp+47.4%
tRNA-ArgTransfer RNA11,12311,19169 bp+–
ND4LProtein-coding gene11,19211,488297 bp+49.2%
ND4Protein-coding gene11,48212,8621,381 bp+45.5%
tRNA-HisTransfer RNA12,86312,93169 bp+–
tRNA-Ser (AGY)Transfer RNA12,93213,00069 bp+–
tRNA-Leu (CUN)Transfer RNA13,00213,07473 bp+–
ND5Protein-coding gene13,07514,9131,839 bp+43.7%
ND6Protein-coding gene14,91015,431522 bp−47.7%
tRNA-GluTransfer RNA15,43215,50069 bp−–
CYTBProtein-coding gene15,50416,6441,141 bp+46.2%
tRNA-ThrTransfer RNA16,64516,71672 bp+–
tRNA-ProTransfer RNA16,71616,78570 bp−–

Downloads