Oncorhynchus kisutch

Coho salmon

Maximum lifespan

5 yr

AnAge record

mtDNA size

16,659 bp

RefSeq NC_009263.1

GC content

46.25%

Whole genome

Non-coding

1,069 bp

D-loop 1,002 bp

Where Coho salmon sits among 2,335 species

Whole-genome GC content against maximum lifespan. Coho salmon has the 1,989th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,659 bp

GC skew (G − C) / (G + C): −0.256
AT skew (A − T) / (A + T): +0.035

Life history

Maximum lifespan: 5 years
Adult weight: 8.4 kg
Female sexual maturity: 3 years
Male sexual maturity: 3 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04464)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,659 bp

Protein-coding11,413 bp

12S rRNA947 bp

16S rRNA1,690 bp

All tRNA1,541 bp

D-loop1,002 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Oncorhynchus kisutch genes

ND1NADH dehydrogenase subunit 1	975 bp	24.5%	27.2%	16.5%	31.8%	48.31%	−0.316	−0.052
ND2NADH dehydrogenase subunit 2	1,050 bp	27.3%	27.4%	13.5%	31.7%	45.24%	−0.402	−0.002
COX1Cytochrome c oxidase subunit I	1,551 bp	24.6%	29.6%	18.9%	26.9%	45.78%	−0.175	−0.092
COX2Cytochrome c oxidase subunit II	691 bp	27.2%	28.7%	16.8%	27.4%	44.14%	−0.239	−0.026
ATP8ATP synthase F0 subunit 8	168 bp	29.2%	25.0%	13.1%	32.7%	45.83%	−0.429	+0.077
ATP6ATP synthase F0 subunit 6	684 bp	25.4%	28.1%	13.7%	32.7%	46.49%	−0.409	−0.049
COX3Cytochrome c oxidase subunit III	786 bp	24.8%	28.2%	16.8%	30.2%	46.95%	−0.285	−0.065
ND3NADH dehydrogenase subunit 3	350 bp	24.0%	29.1%	15.1%	31.7%	46.86%	−0.354	−0.097
ND4LNADH dehydrogenase subunit 4L	297 bp	23.9%	26.6%	16.8%	32.7%	49.50%	−0.320	−0.053
ND4NADH dehydrogenase subunit 4	1,381 bp	26.9%	27.0%	15.0%	31.1%	46.05%	−0.349	−0.001
ND5NADH dehydrogenase subunit 5	1,839 bp	29.0%	26.6%	13.5%	30.8%	44.32%	−0.391	+0.043
ND6NADH dehydrogenase subunit 6	522 bp	38.1%	12.8%	13.2%	35.8%	49.04%	−0.461	+0.496
CYTBCytochrome b	1,141 bp	23.6%	28.5%	16.7%	31.2%	47.94%	−0.302	−0.094
12S rRNA12S ribosomal RNA	947 bp	29.7%	19.9%	23.1%	27.3%	50.48%	−0.084	+0.198
16S rRNA16S ribosomal RNA	1,690 bp	32.5%	19.8%	22.5%	25.1%	47.69%	−0.055	+0.242
D-loopControl region (D-loop)	1,002 bp	30.3%	30.9%	16.0%	22.8%	38.72%	−0.175	−0.010

Codon usage

Counts per codon, darker is more frequent

Gene

3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU111

UUC115

Leu L17.2%

UUA98

UUG27

CUU143

CUC144

CUA199

CUG46

Ile I7.1%

AUU135

AUC135

Met M4.0%

AUA93

AUG58

Val V6.0%

GUU60

GUC53

GUA74

GUG41

Ser S6.3%

UCU50

UCC72

UCA56

UCG10

AGU10

AGC42

Pro P5.6%

CCU45

CCC86

CCA68

CCG14

Thr T8.1%

ACU73

ACC122

ACA99

ACG15

Ala A9.1%

GCU79

GCC158

GCA90

GCG21

Tyr Y2.9%

UAU41

UAC69

His H2.9%

CAU31

CAC78

Gln Q2.6%

CAA87

CAG13

Asn N3.1%

AAU38

AAC80

Lys K1.9%

AAA64

AAG10

Asp D1.9%

GAU26

GAC47

Glu E2.8%

GAA84

GAG21

Cys C0.7%

UGU8

UGC19

Trp W3.2%

UGA101

UGG20

Arg R2.0%

CGU7

CGC12

CGA46

CGG10

Gly G6.5%

GGU35

GGC75

GGA73

GGG64

Stop 0.2%

UAA6

UAG3

AGA0

AGG0

Genome map

38 annotated features in NC_009263.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (46.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Oncorhynchus kisutch (NC_009263.1)
Feature	Type	Start	End	Length	Strand	GC
D-loop	Control region	1	1,002	1,002 bp	–	38.7%
tRNA-Phe	Transfer RNA	1,003	1,070	68 bp	+	–
12S rRNA	Ribosomal RNA	1,071	2,017	947 bp	+	50.5%
tRNA-Val	Transfer RNA	2,018	2,089	72 bp	+	–
16S rRNA	Ribosomal RNA	2,090	3,779	1,690 bp	+	47.7%
tRNA-Leu (UUR)	Transfer RNA	3,780	3,844	65 bp	+	–
ND1	Protein-coding gene	3,845	4,819	975 bp	+	48.3%
tRNA-Ile	Transfer RNA	4,823	4,894	72 bp	+	–
tRNA-Gln	Transfer RNA	4,892	4,962	71 bp	−	–
tRNA-Met	Transfer RNA	4,962	5,030	69 bp	+	–
ND2	Protein-coding gene	5,031	6,080	1,050 bp	+	45.2%
tRNA-Trp	Transfer RNA	6,083	6,152	70 bp	+	–
tRNA-Ala	Transfer RNA	6,155	6,223	69 bp	−	–
tRNA-Asn	Transfer RNA	6,225	6,297	73 bp	−	–
tRNA-Cys	Transfer RNA	6,332	6,398	67 bp	−	–
tRNA-Tyr	Transfer RNA	6,399	6,469	71 bp	+	–
COX1	Protein-coding gene	6,471	8,021	1,551 bp	+	45.8%
tRNA-Ser (UCN)	Transfer RNA	8,022	8,092	71 bp	−	–
tRNA-Asp	Transfer RNA	8,097	8,170	74 bp	+	–
COX2	Protein-coding gene	8,185	8,875	691 bp	+	44.1%
tRNA-Lys	Transfer RNA	8,876	8,949	74 bp	+	–
ATP8	Protein-coding gene	8,951	9,118	168 bp	+	45.8%
ATP6	Protein-coding gene	9,109	9,792	684 bp	+	46.5%
COX3	Protein-coding gene	9,792	10,577	786 bp	+	47.0%
tRNA-Gly	Transfer RNA	10,577	10,646	70 bp	+	–
ND3	Protein-coding gene	10,647	10,996	350 bp	+	46.9%
tRNA-Arg	Transfer RNA	10,997	11,065	69 bp	+	–
ND4L	Protein-coding gene	11,066	11,362	297 bp	+	49.5%
ND4	Protein-coding gene	11,356	12,736	1,381 bp	+	46.1%
tRNA-His	Transfer RNA	12,737	12,805	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	12,806	12,874	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	12,876	12,948	73 bp	+	–
ND5	Protein-coding gene	12,949	14,787	1,839 bp	+	44.3%
ND6	Protein-coding gene	14,784	15,305	522 bp	−	49.0%
tRNA-Glu	Transfer RNA	15,306	15,373	68 bp	−	–
CYTB	Protein-coding gene	15,378	16,518	1,141 bp	+	47.9%
tRNA-Thr	Transfer RNA	16,519	16,590	72 bp	+	–
tRNA-Pro	Transfer RNA	16,590	16,659	70 bp	−	–