MitoAge

Oncorhynchus mykiss

Steelhead

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Maximum lifespan
11 yr
AnAge record
mtDNA size
16,642 bp
RefSeq NC_001717.1
GC content
45.96%
Whole genome
Non-coding
1,072 bp
D-loop 1,003 bp

Where Steelhead sits among 2,335 species

Whole-genome GC content against maximum lifespan. Steelhead has the 1,491st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Steelhead
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,642 bp
GC skew (G − C) / (G + C)
−0.258
AT skew (A − T) / (A + T)
+0.031

Life history

Maximum lifespan
11 years
Adult weight
12.2 kg
Male sexual maturity
2.5 years
Gestation or incubation
18 days
Litter or clutch size
3,500

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04465)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)
  • A match to a lifespan source is under review and was not used.

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,642 bp
Protein-coding11,397 bp
12S rRNA944 bp
16S rRNA1,680 bp
All tRNA1,550 bp
D-loop1,003 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1972 bp24.8%28.4%16.6%30.2%46.81%−0.292−0.068
ND2NADH dehydrogenase subunit 21,050 bp28.1%26.2%13.0%32.7%45.71%−0.429+0.035
COX1Cytochrome c oxidase subunit I1,551 bp25.4%29.4%18.3%26.9%45.20%−0.190−0.073
COX2Cytochrome c oxidase subunit II691 bp26.8%29.4%16.9%26.9%43.85%−0.228−0.046
ATP8ATP synthase F0 subunit 8168 bp28.6%25.0%13.7%32.7%46.43%−0.410+0.067
ATP6ATP synthase F0 subunit 6672 bp25.4%28.4%13.7%32.4%46.13%−0.406−0.055
COX3Cytochrome c oxidase subunit III786 bp24.4%29.4%16.9%29.3%46.18%−0.267−0.092
ND3NADH dehydrogenase subunit 3349 bp23.8%29.2%14.9%32.1%46.99%−0.366−0.103
ND4LNADH dehydrogenase subunit 4L297 bp23.6%24.9%17.5%34.0%51.52%−0.320−0.028
ND4NADH dehydrogenase subunit 41,381 bp26.4%28.5%15.1%30.0%45.11%−0.329−0.037
ND5NADH dehydrogenase subunit 51,839 bp29.3%26.6%13.1%31.0%44.15%−0.406+0.048
ND6NADH dehydrogenase subunit 6522 bp36.0%14.9%14.0%35.1%49.04%−0.430+0.414
CYTBCytochrome b1,141 bp24.5%29.2%15.6%30.8%46.36%−0.327−0.088
12S rRNA12S ribosomal RNA944 bp30.2%19.6%22.8%27.4%50.21%−0.093+0.213
16S rRNA16S ribosomal RNA1,680 bp32.0%19.5%22.9%25.6%48.45%−0.057+0.242
D-loopControl region (D-loop)1,003 bp30.6%30.9%15.6%22.9%38.49%−0.192−0.005

Codon usage

Counts per codon, darker is more frequent

3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU114
UUC113
Leu L17.3%
UUA110
UUG24
CUU150
CUC146
CUA185
CUG42
Ile I7.0%
AUU135
AUC130
Met M3.9%
AUA108
AUG41
Val V6.1%
GUU56
GUC55
GUA90
GUG32
Ser S6.3%
UCU55
UCC67
UCA55
UCG9
AGU11
AGC43
Pro P5.5%
CCU49
CCC87
CCA57
CCG18
Thr T8.3%
ACU79
ACC120
ACA96
ACG20
Ala A9.0%
GCU75
GCC150
GCA93
GCG24
Tyr Y2.9%
UAU41
UAC69
His H2.9%
CAU27
CAC84
Gln Q2.6%
CAA89
CAG11
Asn N2.9%
AAU36
AAC76
Lys K1.9%
AAA59
AAG15
Asp D1.9%
GAU26
GAC48
Glu E2.8%
GAA83
GAG23
Cys C0.7%
UGU8
UGC20
Trp W3.2%
UGA101
UGG20
Arg R2.0%
CGU8
CGC11
CGA48
CGG8
Gly G6.5%
GGU33
GGC72
GGA93
GGG48
Stop 0.2%
UAA7
UAG2
AGA0
AGG0

Genome map

38 annotated features in NC_001717.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,0031,003 bp–38.5%
tRNA-PheTransfer RNA1,0041,07168 bp+–
12S rRNARibosomal RNA1,0722,015944 bp+50.2%
tRNA-ValTransfer RNA2,0162,08772 bp+–
16S rRNARibosomal RNA2,0883,7671,680 bp+48.5%
tRNA-Leu (UUR)Transfer RNA3,7683,84376 bp+–
ND1Protein-coding gene3,8444,815972 bp+46.8%
tRNA-IleTransfer RNA4,8194,89072 bp+–
tRNA-GlnTransfer RNA4,8884,95871 bp−–
tRNA-MetTransfer RNA4,9585,02669 bp+–
ND2Protein-coding gene5,0276,0761,050 bp+45.7%
tRNA-TrpTransfer RNA6,0796,14769 bp+–
tRNA-AlaTransfer RNA6,1496,21769 bp−–
tRNA-AsnTransfer RNA6,2196,29173 bp−–
tRNA-CysTransfer RNA6,3296,39567 bp−–
tRNA-TyrTransfer RNA6,3966,46671 bp−–
COX1Protein-coding gene6,4688,0181,551 bp+45.2%
tRNA-Ser (UCN)Transfer RNA8,0198,08971 bp−–
tRNA-AspTransfer RNA8,0948,16673 bp+–
COX2Protein-coding gene8,1818,871691 bp+43.9%
tRNA-LysTransfer RNA8,8728,94574 bp+–
ATP8Protein-coding gene8,9479,114168 bp+46.4%
ATP6Protein-coding gene9,1059,776672 bp+46.1%
COX3Protein-coding gene9,77610,561786 bp+46.2%
tRNA-GlyTransfer RNA10,56110,63070 bp+–
ND3Protein-coding gene10,63110,979349 bp+47.0%
tRNA-ArgTransfer RNA10,98111,04969 bp+–
ND4LProtein-coding gene11,05011,346297 bp+51.5%
ND4Protein-coding gene11,34012,7201,381 bp+45.1%
tRNA-HisTransfer RNA12,72112,78969 bp+–
tRNA-Ser (AGY)Transfer RNA12,79012,85869 bp+–
tRNA-Leu (CUN)Transfer RNA12,86012,93172 bp+–
ND5Protein-coding gene12,93214,7701,839 bp+44.2%
ND6Protein-coding gene14,76715,288522 bp−49.0%
tRNA-GluTransfer RNA15,28915,35769 bp−–
CYTBProtein-coding gene15,36116,5011,141 bp+46.4%
tRNA-ThrTransfer RNA16,50216,57372 bp+–
tRNA-ProTransfer RNA16,57316,64270 bp−–

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