MitoAge

Oncorhynchus tshawytscha

Chinook salmon

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Maximum lifespan
9 yr
AnAge record
mtDNA size
16,644 bp
RefSeq NC_002980.1
GC content
45.67%
Whole genome
Non-coding
1,049 bp
D-loop 986 bp

Where Chinook salmon sits among 2,335 species

Whole-genome GC content against maximum lifespan. Chinook salmon has the 1,654th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Chinook salmon
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,644 bp
GC skew (G − C) / (G + C)
−0.264
AT skew (A − T) / (A + T)
+0.037

Life history

Maximum lifespan
9 years
Adult weight
33.8 kg
Female sexual maturity
4 years
Male sexual maturity
4 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04467)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,644 bp
Protein-coding11,412 bp
12S rRNA947 bp
16S rRNA1,683 bp
All tRNA1,554 bp
D-loop986 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp24.7%27.4%16.0%31.8%47.84%−0.330−0.051
ND2NADH dehydrogenase subunit 21,050 bp28.0%27.5%13.3%31.1%44.48%−0.400+0.009
COX1Cytochrome c oxidase subunit I1,551 bp25.1%29.3%18.6%27.0%45.58%−0.185−0.078
COX2Cytochrome c oxidase subunit II691 bp27.8%28.2%16.4%27.6%43.99%−0.257−0.008
ATP8ATP synthase F0 subunit 8168 bp29.8%25.0%12.5%32.7%45.24%−0.447+0.087
ATP6ATP synthase F0 subunit 6684 bp27.0%29.1%12.4%31.4%43.86%−0.433−0.036
COX3Cytochrome c oxidase subunit III786 bp24.6%28.9%17.0%29.5%46.57%−0.268−0.081
ND3NADH dehydrogenase subunit 3349 bp24.9%30.1%14.0%30.9%44.99%−0.376−0.094
ND4LNADH dehydrogenase subunit 4L297 bp24.2%26.6%16.2%33.0%49.16%−0.342−0.046
ND4NADH dehydrogenase subunit 41,381 bp27.5%27.9%14.6%30.0%44.61%−0.344−0.007
ND5NADH dehydrogenase subunit 51,839 bp29.4%26.4%13.3%31.0%44.26%−0.400+0.054
ND6NADH dehydrogenase subunit 6522 bp38.1%14.6%13.2%34.1%47.32%−0.441+0.447
CYTBCytochrome b1,141 bp24.2%29.0%15.6%31.2%46.80%−0.333−0.091
12S rRNA12S ribosomal RNA947 bp29.9%20.3%22.7%27.1%49.84%−0.089+0.192
16S rRNA16S ribosomal RNA1,683 bp32.9%19.6%22.2%25.3%47.53%−0.065+0.253
D-loopControl region (D-loop)986 bp29.4%31.0%16.0%23.5%39.55%−0.190−0.027

Codon usage

Counts per codon, darker is more frequent

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU111
UUC117
Leu L17.3%
UUA106
UUG28
CUU152
CUC132
CUA192
CUG49
Ile I7.2%
AUU144
AUC130
Met M4.0%
AUA101
AUG50
Val V5.9%
GUU54
GUC57
GUA81
GUG31
Ser S6.2%
UCU48
UCC73
UCA55
UCG10
AGU12
AGC40
Pro P5.6%
CCU45
CCC83
CCA72
CCG12
Thr T8.2%
ACU68
ACC131
ACA101
ACG13
Ala A9.0%
GCU81
GCC148
GCA96
GCG18
Tyr Y2.9%
UAU43
UAC69
His H2.8%
CAU28
CAC80
Gln Q2.7%
CAA88
CAG13
Asn N3.0%
AAU42
AAC73
Lys K2.0%
AAA69
AAG6
Asp D1.9%
GAU27
GAC47
Glu E2.8%
GAA88
GAG17
Cys C0.7%
UGU9
UGC18
Trp W3.2%
UGA107
UGG14
Arg R2.0%
CGU9
CGC11
CGA43
CGG12
Gly G6.5%
GGU29
GGC78
GGA91
GGG48
Stop 0.2%
UAA6
UAG3
AGA0
AGG0

Genome map

38 annotated features in NC_002980.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region1986986 bp–39.6%
tRNA-PheTransfer RNA9871,05468 bp+–
12S rRNARibosomal RNA1,0552,001947 bp+49.8%
tRNA-ValTransfer RNA2,0022,07372 bp+–
16S rRNARibosomal RNA2,0743,7561,683 bp+47.5%
tRNA-Leu (UUR)Transfer RNA3,7573,83175 bp+–
ND1Protein-coding gene3,8324,806975 bp+47.8%
tRNA-IleTransfer RNA4,8104,88172 bp+–
tRNA-GlnTransfer RNA4,8794,94971 bp−–
tRNA-MetTransfer RNA4,9495,01769 bp+–
ND2Protein-coding gene5,0186,0671,050 bp+44.5%
tRNA-TrpTransfer RNA6,0706,13970 bp+–
tRNA-AlaTransfer RNA6,1416,21070 bp−–
tRNA-AsnTransfer RNA6,2126,28473 bp−–
tRNA-CysTransfer RNA6,3166,38267 bp−–
tRNA-TyrTransfer RNA6,3836,45371 bp−–
COX1Protein-coding gene6,4558,0051,551 bp+45.6%
tRNA-Ser (UCN)Transfer RNA8,0068,07671 bp−–
tRNA-AspTransfer RNA8,0818,15575 bp+–
COX2Protein-coding gene8,1708,860691 bp+44.0%
tRNA-LysTransfer RNA8,8618,93474 bp+–
ATP8Protein-coding gene8,9369,103168 bp+45.2%
ATP6Protein-coding gene9,0949,777684 bp+43.9%
COX3Protein-coding gene9,77710,562786 bp+46.6%
tRNA-GlyTransfer RNA10,56210,63170 bp+–
ND3Protein-coding gene10,63210,980349 bp+45.0%
tRNA-ArgTransfer RNA10,98211,05069 bp+–
ND4LProtein-coding gene11,05111,347297 bp+49.2%
ND4Protein-coding gene11,34112,7211,381 bp+44.6%
tRNA-HisTransfer RNA12,72212,78968 bp+–
tRNA-Ser (AGY)Transfer RNA12,79012,85869 bp+–
tRNA-Leu (CUN)Transfer RNA12,86012,93374 bp+–
ND5Protein-coding gene12,93414,7721,839 bp+44.3%
ND6Protein-coding gene14,76915,290522 bp−47.3%
tRNA-GluTransfer RNA15,29115,35969 bp−–
CYTBProtein-coding gene15,36316,5031,141 bp+46.8%
tRNA-ThrTransfer RNA16,50416,57572 bp+–
tRNA-ProTransfer RNA16,57516,64470 bp−–

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