Onychostoma barbatulum
Taiwan shoveljaw carp
GC content
43.40%
Whole genome
Non-coding
1,011 bp
D-loop 934 bp
Where Taiwan shoveljaw carp sits among 2,335 species
Whole-genome GC content against maximum lifespan. Taiwan shoveljaw carp has the 1,838th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,597 bp
- GC skew (G − C) / (G + C)
- −0.263
- AT skew (A − T) / (A + T)
- +0.111
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,597 bp
Protein-coding11,394 bp
12S rRNA955 bp
16S rRNA1,682 bp
All tRNA1,556 bp
D-loop934 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.33% | −0.308 | +0.054 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 43.83% | −0.406 | +0.206 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.49% | −0.197 | −0.041 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.97% | −0.276 | +0.087 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 38.79% | −0.375 | +0.168 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.94% | −0.386 | +0.064 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.31% | −0.235 | +0.020 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.12% | −0.333 | −0.020 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 43.10% | −0.234 | −0.124 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.52% | −0.344 | +0.090 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,827 bp | 42.47% | −0.405 | +0.130 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.06% | −0.470 | +0.521 | |||||
| CYTBCytochrome b | 1,141 bp | 43.03% | −0.328 | +0.034 | |||||
| 12S rRNA12S ribosomal RNA | 955 bp | 49.11% | −0.087 | +0.222 | |||||
| 16S rRNA16S ribosomal RNA | 1,682 bp | 43.94% | −0.088 | +0.294 | |||||
| D-loopControl region (D-loop) | 934 bp | 34.80% | −0.274 | +0.028 |
Codon usage
Counts per codon, darker is more frequent3,802 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU100
UUC120
Leu L16.6%
UUA121
UUG13
CUU95
CUC92
CUA247
CUG63
Ile I7.5%
AUU147
AUC139
Met M4.6%
AUA134
AUG42
Val V5.7%
GUU61
GUC29
GUA99
GUG26
Ser S6.2%
UCU40
UCC52
UCA87
UCG5
AGU8
AGC44
Pro P5.5%
CCU33
CCC48
CCA122
CCG7
Thr T8.3%
ACU41
ACC114
ACA151
ACG8
Ala A8.8%
GCU58
GCC137
GCA127
GCG14
Tyr Y2.9%
UAU51
UAC61
His H2.9%
CAU23
CAC86
Gln Q2.7%
CAA91
CAG11
Asn N3.3%
AAU38
AAC86
Lys K2.1%
AAA75
AAG4
Asp D1.9%
GAU23
GAC50
Glu E2.7%
GAA92
GAG10
Cys C0.7%
UGU10
UGC16
Trp W3.1%
UGA101
UGG18
Arg R2.1%
CGU11
CGC14
CGA48
CGG5
Gly G6.5%
GGU36
GGC42
GGA126
GGG43
Stop 0.2%
UAA4
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_021644.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,024 | 955 bp | + | 49.1% |
| tRNA-Val | Transfer RNA | 1,025 | 1,096 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,097 | 2,778 | 1,682 bp | + | 43.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,779 | 2,854 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 45.3% |
| tRNA-Ile | Transfer RNA | 3,835 | 3,906 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,905 | 3,975 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,978 | 4,046 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,047 | 5,091 | 1,045 bp | + | 43.8% |
| tRNA-Trp | Transfer RNA | 5,092 | 5,161 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,165 | 5,233 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,235 | 5,307 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,346 | 5,411 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,411 | 5,481 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,483 | 7,033 | 1,551 bp | + | 44.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,034 | 7,104 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,110 | 7,179 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,193 | 7,883 | 691 bp | + | 42.0% |
| tRNA-Lys | Transfer RNA | 7,883 | 7,960 | 78 bp | + | – |
| ATP8 | Protein-coding gene | 7,961 | 8,125 | 165 bp | + | 38.8% |
| ATP6 | Protein-coding gene | 8,119 | 8,802 | 684 bp | + | 40.9% |
| COX3 | Protein-coding gene | 8,802 | 9,586 | 785 bp | + | 43.3% |
| tRNA-Gly | Transfer RNA | 9,587 | 9,657 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,658 | 10,006 | 349 bp | + | 42.1% |
| tRNA-Arg | Transfer RNA | 10,007 | 10,076 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,077 | 10,373 | 297 bp | + | 43.1% |
| ND4 | Protein-coding gene | 10,367 | 11,747 | 1,381 bp | + | 43.5% |
| tRNA-His | Transfer RNA | 11,748 | 11,816 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,818 | 11,886 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,888 | 11,960 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,961 | 13,787 | 1,827 bp | + | 42.5% |
| ND6 | Protein-coding gene | 13,784 | 14,305 | 522 bp | − | 44.1% |
| tRNA-Glu | Transfer RNA | 14,306 | 14,374 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,382 | 15,522 | 1,141 bp | + | 43.0% |
| tRNA-Thr | Transfer RNA | 15,523 | 15,594 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,594 | 15,663 | 70 bp | − | – |
| D-loop | Control region | 15,664 | 16,597 | 934 bp | – | 34.8% |