Ophiodon elongatus

Lingcod

Maximum lifespan

20 yr

AnAge record

mtDNA size

16,528 bp

RefSeq NC_026887.1

GC content

47.70%

Whole genome

Non-coding

936 bp

D-loop 874 bp

Where Lingcod sits among 2,335 species

Whole-genome GC content against maximum lifespan. Lingcod has the 900th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,528 bp

GC skew (G − C) / (G + C): −0.265
AT skew (A − T) / (A + T): +0.020

Life history

Maximum lifespan: 20 years
Adult weight: 32.5 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04495)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,528 bp

Protein-coding11,406 bp

12S rRNA945 bp

16S rRNA1,691 bp

All tRNA1,550 bp

D-loop874 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Ophiodon elongatus genes

ND1NADH dehydrogenase subunit 1	975 bp	23.8%	27.8%	15.7%	32.7%	48.41%	−0.352	−0.078
ND2NADH dehydrogenase subunit 2	1,045 bp	24.9%	24.0%	14.6%	36.5%	51.10%	−0.427	+0.018
COX1Cytochrome c oxidase subunit I	1,551 bp	23.9%	29.0%	18.3%	28.8%	47.07%	−0.222	−0.096
COX2Cytochrome c oxidase subunit II	691 bp	27.5%	28.5%	16.4%	27.6%	43.99%	−0.257	−0.018
ATP8ATP synthase F0 subunit 8	168 bp	31.0%	22.6%	11.9%	34.5%	46.43%	−0.487	+0.156
ATP6ATP synthase F0 subunit 6	684 bp	24.9%	25.4%	14.3%	35.4%	49.71%	−0.424	−0.012
COX3Cytochrome c oxidase subunit III	785 bp	23.6%	26.1%	17.7%	32.6%	50.32%	−0.296	−0.051
ND3NADH dehydrogenase subunit 3	349 bp	21.5%	29.5%	16.9%	32.1%	49.00%	−0.310	−0.157
ND4LNADH dehydrogenase subunit 4L	297 bp	19.2%	27.3%	16.8%	36.7%	53.54%	−0.371	−0.174
ND4NADH dehydrogenase subunit 4	1,381 bp	23.4%	26.8%	16.9%	32.9%	49.82%	−0.323	−0.068
ND5NADH dehydrogenase subunit 5	1,839 bp	25.6%	26.6%	15.1%	32.7%	47.74%	−0.369	−0.020
ND6NADH dehydrogenase subunit 6	522 bp	35.1%	16.5%	16.9%	31.6%	48.47%	−0.304	+0.361
CYTBCytochrome b	1,141 bp	23.3%	28.3%	16.1%	32.3%	48.38%	−0.333	−0.097
12S rRNA12S ribosomal RNA	945 bp	30.8%	19.9%	21.8%	27.5%	49.31%	−0.116	+0.215
16S rRNA16S ribosomal RNA	1,691 bp	31.6%	21.6%	21.2%	25.5%	46.72%	−0.094	+0.188
D-loopControl region (D-loop)	874 bp	32.7%	30.8%	16.0%	20.5%	36.50%	−0.122	+0.031

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU97

UUC132

Leu L17.4%

UUA72

UUG32

CUU163

CUC168

CUA167

CUG62

Ile I6.7%

AUU131

AUC123

Met M4.1%

AUA82

AUG75

Val V6.0%

GUU51

GUC70

GUA80

GUG26

Ser S6.3%

UCU41

UCC77

UCA49

UCG16

AGU12

AGC46

Pro P5.8%

CCU46

CCC126

CCA40

CCG9

Thr T8.2%

ACU46

ACC144

ACA111

ACG10

Ala A9.4%

GCU66

GCC184

GCA93

GCG14

Tyr Y2.9%

UAU39

UAC71

His H2.9%

CAU29

CAC81

Gln Q2.6%

CAA75

CAG24

Asn N2.9%

AAU30

AAC80

Lys K1.9%

AAA58

AAG13

Asp D1.9%

GAU25

GAC48

Glu E2.6%

GAA75

GAG24

Cys C0.6%

UGU8

UGC16

Trp W3.2%

UGA86

UGG34

Arg R2.0%

CGU10

CGC18

CGA38

CGG11

Gly G6.5%

GGU28

GGC103

GGA65

GGG50

Stop 0.2%

UAA6

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_026887.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Ophiodon elongatus (NC_026887.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,013	945 bp	+	49.3%
tRNA-Val	Transfer RNA	1,014	1,085	72 bp	+	–
16S rRNA	Ribosomal RNA	1,086	2,776	1,691 bp	+	46.7%
tRNA-Leu (UUR)	Transfer RNA	2,777	2,850	74 bp	+	–
ND1	Protein-coding gene	2,851	3,825	975 bp	+	48.4%
tRNA-Ile	Transfer RNA	3,830	3,899	70 bp	+	–
tRNA-Gln	Transfer RNA	3,899	3,969	71 bp	−	–
tRNA-Met	Transfer RNA	3,969	4,037	69 bp	+	–
ND2	Protein-coding gene	4,038	5,082	1,045 bp	+	51.1%
tRNA-Trp	Transfer RNA	5,083	5,153	71 bp	+	–
tRNA-Ala	Transfer RNA	5,155	5,223	69 bp	−	–
tRNA-Asn	Transfer RNA	5,226	5,298	73 bp	−	–
tRNA-Cys	Transfer RNA	5,334	5,399	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,400	5,469	70 bp	−	–
COX1	Protein-coding gene	5,471	7,021	1,551 bp	+	47.1%
tRNA-Ser (UCN)	Transfer RNA	7,022	7,092	71 bp	−	–
tRNA-Asp	Transfer RNA	7,096	7,168	73 bp	+	–
COX2	Protein-coding gene	7,176	7,866	691 bp	+	44.0%
tRNA-Lys	Transfer RNA	7,867	7,940	74 bp	+	–
ATP8	Protein-coding gene	7,942	8,109	168 bp	+	46.4%
ATP6	Protein-coding gene	8,100	8,783	684 bp	+	49.7%
COX3	Protein-coding gene	8,783	9,567	785 bp	+	50.3%
tRNA-Gly	Transfer RNA	9,568	9,639	72 bp	+	–
ND3	Protein-coding gene	9,640	9,988	349 bp	+	49.0%
tRNA-Arg	Transfer RNA	9,989	10,057	69 bp	+	–
ND4L	Protein-coding gene	10,058	10,354	297 bp	+	53.5%
ND4	Protein-coding gene	10,348	11,728	1,381 bp	+	49.8%
tRNA-His	Transfer RNA	11,729	11,797	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,798	11,865	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,870	11,942	73 bp	+	–
ND5	Protein-coding gene	11,943	13,781	1,839 bp	+	47.7%
ND6	Protein-coding gene	13,778	14,299	522 bp	−	48.5%
tRNA-Glu	Transfer RNA	14,300	14,368	69 bp	−	–
CYTB	Protein-coding gene	14,373	15,513	1,141 bp	+	48.4%
tRNA-Thr	Transfer RNA	15,514	15,585	72 bp	+	–
tRNA-Pro	Transfer RNA	15,585	15,654	70 bp	−	–
D-loop	Control region	15,655	16,528	874 bp	–	36.5%