Oratosquilla oratoria
Japanese squillid mantis shrimp
GC content
29.21%
Whole genome
Non-coding
989 bp
D-loop 816 bp
Where Japanese squillid mantis shrimp sits among 2,335 species
Whole-genome GC content against maximum lifespan. Japanese squillid mantis shrimp has the 2,326th longest lifespan of them.
- This species
- All other species
Base composition
Whole genome15,783 bp
- GC skew (G − C) / (G + C)
- −0.156
- AT skew (A − T) / (A + T)
- +0.043
About this record
- Lifespan source
- SeaLifeBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome15,783 bp
Protein-coding11,133 bp
12S rRNA827 bp
16S rRNA1,352 bp
All tRNA1,482 bp
D-loop816 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 939 bp | 30.46% | −0.224 | +0.289 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,000 bp | 30.60% | −0.255 | −0.084 | |||||
| COX1Cytochrome c oxidase subunit I | 1,534 bp | 34.42% | −0.004 | −0.135 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 33.58% | −0.048 | −0.028 | |||||
| ATP8ATP synthase F0 subunit 8 | 159 bp | 22.64% | −0.389 | −0.041 | |||||
| ATP6ATP synthase F0 subunit 6 | 678 bp | 30.97% | −0.238 | −0.077 | |||||
| COX3Cytochrome c oxidase subunit III | 788 bp | 35.03% | −0.072 | −0.094 | |||||
| ND3NADH dehydrogenase subunit 3 | 354 bp | 30.79% | +0.009 | −0.167 | |||||
| ND4LNADH dehydrogenase subunit 4L | 300 bp | 28.00% | −0.238 | +0.278 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,340 bp | 29.33% | −0.318 | +0.282 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,713 bp | 29.01% | −0.231 | +0.245 | |||||
| ND6NADH dehydrogenase subunit 6 | 520 bp | 20.96% | −0.229 | −0.129 | |||||
| CYTBCytochrome b | 1,135 bp | 33.74% | −0.065 | −0.149 | |||||
| 12S rRNA12S ribosomal RNA | 827 bp | 28.54% | −0.195 | −0.029 | |||||
| 16S rRNA16S ribosomal RNA | 1,352 bp | 25.00% | −0.243 | +0.077 | |||||
| D-loopControl region (D-loop) | 816 bp | 17.16% | −0.157 | +0.107 |
Codon usage
Counts per codon, darker is more frequent3,713 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F8.5%
UUU245
UUC71
Leu L15.5%
UUA331
UUG62
CUU90
CUC13
CUA70
CUG8
Ile I7.6%
AUU246
AUC37
Met M6.5%
AUA198
AUG44
Val V6.6%
GUU119
GUC14
GUA95
GUG18
Ser S8.8%
UCU129
UCC16
UCA42
UCG10
AGU66
AGC1
AGA50
AGG11
Pro P3.7%
CCU99
CCC8
CCA26
CCG3
Thr T5.7%
ACU90
ACC13
ACA96
ACG12
Ala A6.2%
GCU107
GCC34
GCA77
GCG13
Tyr Y4.0%
UAU127
UAC21
His H2.2%
CAU47
CAC35
Gln Q2.0%
CAA66
CAG7
Asn N3.6%
AAU83
AAC51
Lys K2.2%
AAA76
AAG4
Asp D2.0%
GAU45
GAC30
Glu E2.3%
GAA66
GAG20
Cys C1.1%
UGU36
UGC4
Trp W2.7%
UGA83
UGG16
Arg R1.7%
CGU25
CGC4
CGA28
CGG5
Gly G7.1%
GGU87
GGC13
GGA118
GGG46
Stop 0.2%
UAA6
UAG0
Genome map
38 annotated features in NC_014342.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (29.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| COX1 | Protein-coding gene | 1 | 1,534 | 1,534 bp | + | 34.4% |
| tRNA-Leu (UUR) | Transfer RNA | 1,535 | 1,601 | 67 bp | + | – |
| COX2 | Protein-coding gene | 1,605 | 2,292 | 688 bp | + | 33.6% |
| tRNA-Lys | Transfer RNA | 2,293 | 2,360 | 68 bp | + | – |
| tRNA-Asp | Transfer RNA | 2,360 | 2,428 | 69 bp | + | – |
| ATP8 | Protein-coding gene | 2,429 | 2,587 | 159 bp | + | 22.6% |
| ATP6 | Protein-coding gene | 2,581 | 3,258 | 678 bp | + | 31.0% |
| COX3 | Protein-coding gene | 3,258 | 4,045 | 788 bp | + | 35.0% |
| tRNA-Gly | Transfer RNA | 4,046 | 4,111 | 66 bp | + | – |
| ND3 | Protein-coding gene | 4,112 | 4,465 | 354 bp | + | 30.8% |
| tRNA-Ala | Transfer RNA | 4,466 | 4,530 | 65 bp | + | – |
| tRNA-Arg | Transfer RNA | 4,531 | 4,595 | 65 bp | + | – |
| tRNA-Asn | Transfer RNA | 4,600 | 4,668 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 4,669 | 4,736 | 68 bp | + | – |
| tRNA-Glu | Transfer RNA | 4,737 | 4,803 | 67 bp | + | – |
| tRNA-Phe | Transfer RNA | 4,905 | 4,972 | 68 bp | − | – |
| ND5 | Protein-coding gene | 4,973 | 6,685 | 1,713 bp | − | 29.0% |
| tRNA-His | Transfer RNA | 6,704 | 6,770 | 67 bp | − | – |
| ND4 | Protein-coding gene | 6,771 | 8,110 | 1,340 bp | − | 29.3% |
| ND4L | Protein-coding gene | 8,104 | 8,403 | 300 bp | − | 28.0% |
| tRNA-Thr | Transfer RNA | 8,406 | 8,472 | 67 bp | + | – |
| tRNA-Pro | Transfer RNA | 8,473 | 8,538 | 66 bp | − | – |
| ND6 | Protein-coding gene | 8,549 | 9,068 | 520 bp | + | 21.0% |
| CYTB | Protein-coding gene | 9,069 | 10,203 | 1,135 bp | + | 33.7% |
| tRNA-Ser (UCN) | Transfer RNA | 10,204 | 10,273 | 70 bp | + | – |
| ND1 | Protein-coding gene | 10,290 | 11,228 | 939 bp | − | 30.5% |
| tRNA-Leu (CUN) | Transfer RNA | 11,229 | 11,293 | 65 bp | − | – |
| 16S rRNA | Ribosomal RNA | 11,294 | 12,645 | 1,352 bp | − | 25.0% |
| tRNA-Val | Transfer RNA | 12,646 | 12,716 | 71 bp | − | – |
| 12S rRNA | Ribosomal RNA | 12,717 | 13,543 | 827 bp | − | 28.5% |
| D-loop | Control region | 13,544 | 14,359 | 816 bp | – | 17.2% |
| tRNA-Ile | Transfer RNA | 14,360 | 14,428 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 14,426 | 14,494 | 69 bp | − | – |
| tRNA-Met | Transfer RNA | 14,512 | 14,580 | 69 bp | + | – |
| ND2 | Protein-coding gene | 14,581 | 15,580 | 1,000 bp | + | 30.6% |
| tRNA-Trp | Transfer RNA | 15,581 | 15,649 | 69 bp | + | – |
| tRNA-Cys | Transfer RNA | 15,650 | 15,713 | 64 bp | − | – |
| tRNA-Tyr | Transfer RNA | 15,716 | 15,783 | 68 bp | − | – |