Osmerus mordax
Rainbow smelt
GC content
48.58%
Whole genome
Non-coding
1,009 bp
D-loop 939 bp
Where Rainbow smelt sits among 2,335 species
Whole-genome GC content against maximum lifespan. Rainbow smelt has the 1,815th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,620 bp
- GC skew (G − C) / (G + C)
- −0.229
- AT skew (A − T) / (A + T)
- −0.033
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
- A match to a lifespan source is under review and was not used.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,620 bp
Protein-coding11,408 bp
12S rRNA945 bp
16S rRNA1,706 bp
All tRNA1,554 bp
D-loop939 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 971 bp | 50.36% | −0.284 | −0.174 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,051 bp | 51.19% | −0.338 | −0.096 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 49.32% | −0.166 | −0.170 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.45% | −0.240 | −0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 49.41% | −0.325 | −0.035 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.22% | −0.356 | −0.169 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.55% | −0.290 | −0.101 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.29% | −0.285 | −0.282 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.85% | −0.299 | −0.189 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.44% | −0.291 | −0.084 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.42% | −0.346 | −0.084 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 54.02% | −0.362 | +0.483 | |||||
| CYTBCytochrome b | 1,141 bp | 48.20% | −0.287 | −0.154 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 50.69% | −0.052 | +0.146 | |||||
| 16S rRNA16S ribosomal RNA | 1,706 bp | 47.60% | −0.052 | +0.183 | |||||
| D-loopControl region (D-loop) | 939 bp | 42.81% | −0.199 | −0.035 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU99
UUC137
Leu L16.8%
UUA72
UUG28
CUU185
CUC174
CUA117
CUG65
Ile I6.9%
AUU152
AUC112
Met M3.9%
AUA69
AUG81
Val V6.3%
GUU64
GUC70
GUA61
GUG43
Ser S7.1%
UCU69
UCC96
UCA39
UCG10
AGU8
AGC47
Pro P5.6%
CCU58
CCC102
CCA36
CCG16
Thr T7.2%
ACU64
ACC122
ACA64
ACG26
Ala A9.7%
GCU92
GCC164
GCA82
GCG30
Tyr Y2.8%
UAU42
UAC65
His H2.7%
CAU26
CAC76
Gln Q2.5%
CAA72
CAG23
Asn N2.9%
AAU36
AAC75
Lys K2.0%
AAA64
AAG12
Asp D1.9%
GAU17
GAC56
Glu E2.7%
GAA58
GAG45
Cys C0.8%
UGU12
UGC20
Trp W3.2%
UGA83
UGG39
Arg R2.0%
CGU7
CGC17
CGA36
CGG18
Gly G6.5%
GGU22
GGC91
GGA46
GGG89
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_015246.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 50.7% |
| tRNA-Val | Transfer RNA | 1,014 | 1,084 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,085 | 2,790 | 1,706 bp | + | 47.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,796 | 2,869 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,868 | 3,838 | 971 bp | + | 50.4% |
| tRNA-Ile | Transfer RNA | 3,846 | 3,917 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,918 | 3,987 | 70 bp | − | – |
| tRNA-Met | Transfer RNA | 3,987 | 4,055 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,060 | 5,110 | 1,051 bp | + | 51.2% |
| tRNA-Trp | Transfer RNA | 5,111 | 5,182 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,184 | 5,252 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,254 | 5,326 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,354 | 5,418 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,419 | 5,486 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,489 | 7,039 | 1,551 bp | + | 49.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,040 | 7,110 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,115 | 7,187 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,202 | 7,892 | 691 bp | + | 46.5% |
| tRNA-Lys | Transfer RNA | 7,893 | 7,967 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,969 | 8,136 | 168 bp | + | 49.4% |
| ATP6 | Protein-coding gene | 8,127 | 8,810 | 684 bp | + | 47.2% |
| COX3 | Protein-coding gene | 8,810 | 9,594 | 785 bp | + | 49.6% |
| tRNA-Gly | Transfer RNA | 9,595 | 9,665 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,666 | 10,014 | 349 bp | + | 51.3% |
| tRNA-Arg | Transfer RNA | 10,015 | 10,084 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,085 | 10,381 | 297 bp | + | 51.9% |
| ND4 | Protein-coding gene | 10,375 | 11,755 | 1,381 bp | + | 48.4% |
| tRNA-His | Transfer RNA | 11,756 | 11,824 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,825 | 11,893 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,894 | 11,967 | 74 bp | + | – |
| ND5 | Protein-coding gene | 11,968 | 13,806 | 1,839 bp | + | 47.4% |
| ND6 | Protein-coding gene | 13,803 | 14,324 | 522 bp | − | 54.0% |
| tRNA-Glu | Transfer RNA | 14,325 | 14,394 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,399 | 15,539 | 1,141 bp | + | 48.2% |
| tRNA-Thr | Transfer RNA | 15,540 | 15,611 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,612 | 15,681 | 70 bp | − | – |
| D-loop | Control region | 15,682 | 16,620 | 939 bp | – | 42.8% |