Otolithes ruber
Tigertooth croaker
GC content
45.21%
Whole genome
Non-coding
925 bp
D-loop 838 bp
Where Tigertooth croaker sits among 2,335 species
Whole-genome GC content against maximum lifespan. Tigertooth croaker has the 2,039th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,589 bp
- GC skew (G − C) / (G + C)
- −0.288
- AT skew (A − T) / (A + T)
- −0.001
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,589 bp
Protein-coding11,411 bp
12S rRNA958 bp
16S rRNA1,752 bp
All tRNA1,548 bp
D-loop838 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 972 bp | 46.19% | −0.412 | −0.071 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 45.27% | −0.489 | −0.065 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 46.63% | −0.204 | −0.083 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.71% | −0.291 | −0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.69% | −0.415 | −0.010 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.03% | −0.468 | −0.080 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.39% | −0.280 | −0.109 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.42% | −0.373 | −0.178 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.79% | −0.324 | −0.193 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.26% | −0.347 | −0.048 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 42.90% | −0.389 | −0.051 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.40% | −0.342 | +0.270 | |||||
| CYTBCytochrome b | 1,141 bp | 47.59% | −0.385 | −0.087 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 48.02% | −0.061 | +0.153 | |||||
| 16S rRNA16S ribosomal RNA | 1,752 bp | 46.40% | −0.154 | +0.184 | |||||
| D-loopControl region (D-loop) | 838 bp | 35.44% | −0.172 | +0.020 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.6%
UUU118
UUC132
Leu L17.4%
UUA100
UUG15
CUU166
CUC184
CUA151
CUG46
Ile I7.5%
AUU189
AUC96
Met M4.0%
AUA113
AUG39
Val V5.3%
GUU51
GUC58
GUA67
GUG24
Ser S6.1%
UCU32
UCC75
UCA67
UCG6
AGU13
AGC39
Pro P5.8%
CCU60
CCC96
CCA53
CCG12
Thr T7.7%
ACU65
ACC118
ACA100
ACG11
Ala A9.0%
GCU72
GCC161
GCA93
GCG15
Tyr Y3.0%
UAU55
UAC61
His H2.9%
CAU36
CAC75
Gln Q2.7%
CAA87
CAG16
Asn N3.1%
AAU51
AAC67
Lys K2.0%
AAA70
AAG5
Asp D2.1%
GAU23
GAC57
Glu E2.5%
GAA77
GAG19
Cys C0.8%
UGU13
UGC16
Trp W3.1%
UGA94
UGG23
Arg R2.2%
CGU12
CGC20
CGA43
CGG7
Gly G6.2%
GGU48
GGC86
GGA60
GGG43
Stop 0.2%
UAA6
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_033909.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,026 | 958 bp | + | 48.0% |
| tRNA-Val | Transfer RNA | 1,027 | 1,099 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,851 | 1,752 bp | + | 46.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,852 | 2,925 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,929 | 3,900 | 972 bp | + | 46.2% |
| tRNA-Ile | Transfer RNA | 3,905 | 3,974 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,974 | 4,044 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,044 | 4,112 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,113 | 5,159 | 1,047 bp | + | 45.3% |
| tRNA-Trp | Transfer RNA | 5,168 | 5,239 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,242 | 5,310 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,316 | 5,388 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,427 | 5,492 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,493 | 5,562 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,564 | 7,120 | 1,557 bp | + | 46.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,116 | 7,186 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,190 | 7,258 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,267 | 7,957 | 691 bp | + | 43.7% |
| tRNA-Lys | Transfer RNA | 7,958 | 8,031 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,033 | 8,200 | 168 bp | + | 38.7% |
| ATP6 | Protein-coding gene | 8,191 | 8,874 | 684 bp | + | 45.0% |
| COX3 | Protein-coding gene | 8,874 | 9,658 | 785 bp | + | 47.4% |
| tRNA-Gly | Transfer RNA | 9,659 | 9,729 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,730 | 10,078 | 349 bp | + | 48.4% |
| tRNA-Arg | Transfer RNA | 10,079 | 10,146 | 68 bp | + | – |
| ND4L | Protein-coding gene | 10,149 | 10,445 | 297 bp | + | 45.8% |
| ND4 | Protein-coding gene | 10,439 | 11,819 | 1,381 bp | + | 45.3% |
| tRNA-His | Transfer RNA | 11,820 | 11,888 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,889 | 11,956 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,961 | 12,033 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,036 | 13,874 | 1,839 bp | + | 42.9% |
| ND6 | Protein-coding gene | 13,871 | 14,392 | 522 bp | − | 45.4% |
| tRNA-Glu | Transfer RNA | 14,394 | 14,463 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,467 | 15,607 | 1,141 bp | + | 47.6% |
| tRNA-Thr | Transfer RNA | 15,608 | 15,679 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,682 | 15,751 | 70 bp | − | – |
| D-loop | Control region | 15,752 | 16,589 | 838 bp | – | 35.4% |