Ovophis okinavensis

Okinawan habu

Maximum lifespan

19 yr

AnAge record

mtDNA size

17,388 bp

RefSeq NC_007397.1

GC content

41.82%

Whole genome

Non-coding

2,340 bp

D-loop 2,221 bp

Where Okinawan habu sits among 2,335 species

Whole-genome GC content against maximum lifespan. Okinawan habu has the 985th longest lifespan of them.

This species
Other reptiles
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,388 bp

GC skew (G − C) / (G + C): −0.399
AT skew (A − T) / (A + T): +0.120

Life history

Maximum lifespan: 19 years

Lifespan from AnAge · AnAge record

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, tiny sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Updated in build 2
In the database since: build 1 (2015-07-01)
Last changed: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome17,388 bp

Protein-coding11,221 bp

12S rRNA915 bp

16S rRNA1,486 bp

All tRNA1,426 bp

D-loop2,221 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Ovophis okinavensis genes

ND1NADH dehydrogenase subunit 1	961 bp	31.2%	26.5%	10.9%	31.3%	42.25%	−0.483	+0.081
ND2NADH dehydrogenase subunit 2	1,030 bp	35.1%	21.9%	9.1%	33.8%	42.91%	−0.575	+0.231
COX1Cytochrome c oxidase subunit I	1,546 bp	28.9%	27.2%	14.8%	29.1%	43.92%	−0.325	+0.031
COX2Cytochrome c oxidase subunit II	685 bp	31.7%	22.3%	15.8%	30.2%	45.99%	−0.314	+0.173
ATP8ATP synthase F0 subunit 8	165 bp	40.0%	25.5%	4.8%	29.7%	34.55%	−0.719	+0.222
ATP6ATP synthase F0 subunit 6	680 bp	30.3%	28.1%	9.3%	32.4%	41.62%	−0.555	+0.038
COX3Cytochrome c oxidase subunit III	784 bp	29.7%	26.3%	15.6%	28.4%	44.01%	−0.293	+0.062
ND3NADH dehydrogenase subunit 3	343 bp	32.1%	25.9%	10.5%	31.5%	41.98%	−0.500	+0.106
ND4LNADH dehydrogenase subunit 4L	290 bp	32.8%	31.4%	11.7%	24.1%	35.86%	−0.346	+0.022
ND4NADH dehydrogenase subunit 4	1,338 bp	32.7%	24.4%	10.2%	32.7%	42.90%	−0.523	+0.147
ND5NADH dehydrogenase subunit 5	1,788 bp	34.0%	24.2%	9.8%	32.0%	41.83%	−0.529	+0.169
ND6NADH dehydrogenase subunit 6	516 bp	44.8%	13.2%	7.0%	35.1%	42.05%	−0.668	+0.545
CYTBCytochrome b	1,114 bp	29.6%	27.8%	10.5%	32.0%	42.55%	−0.506	+0.031
12S rRNA12S ribosomal RNA	915 bp	37.7%	20.9%	16.8%	24.6%	41.42%	−0.187	+0.287
16S rRNA16S ribosomal RNA	1,486 bp	37.4%	22.3%	15.9%	24.4%	40.24%	−0.211	+0.252
D-loopControl region (D-loop)	2,221 bp	28.1%	33.0%	12.2%	26.7%	38.90%	−0.370	−0.082

Codon usage

Counts per codon, darker is more frequent

Gene

3,743 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.6%

UUU92

UUC118

Leu L16.3%

UUA80

UUG14

CUU84

CUC131

CUA262

CUG38

Ile I8.8%

AUU128

AUC203

Met M5.9%

AUA198

AUG22

Val V4.1%

GUU36

GUC34

GUA58

GUG26

Ser S6.9%

UCU44

UCC61

UCA105

UCG2

AGU15

AGC31

Pro P5.5%

CCU21

CCC89

CCA88

CCG8

Thr T11.1%

ACU67

ACC161

ACA177

ACG12

Ala A6.6%

GCU36

GCC106

GCA101

GCG3

Tyr Y2.8%

UAU40

UAC65

His H2.8%

CAU28

CAC75

Gln Q2.5%

CAA81

CAG11

Asn N3.9%

AAU43

AAC104

Lys K2.7%

AAA89

AAG11

Asp D1.5%

GAU19

GAC39

Glu E2.5%

GAA79

GAG15

Cys C0.8%

UGU13

UGC17

Trp W2.5%

UGA82

UGG13

Arg R1.7%

CGU5

CGC17

CGA37

CGG4

Gly G5.4%

GGU21

GGC67

GGA75

GGG38

Stop 0.1%

UAA1

UAG0

AGA1

AGG2

Genome map

39 annotated features in NC_007397.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop2

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (41.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 39 features as a table

Annotated features of Ovophis okinavensis (NC_007397.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	64	64 bp	+	–
12S rRNA	Ribosomal RNA	65	979	915 bp	+	41.4%
tRNA-Val	Transfer RNA	980	1,044	65 bp	+	–
16S rRNA	Ribosomal RNA	1,045	2,530	1,486 bp	+	40.2%
ND1	Protein-coding gene	2,531	3,491	961 bp	+	42.3%
tRNA-Ile	Transfer RNA	3,492	3,559	68 bp	+	–
tRNA-Pro	Transfer RNA	3,564	3,626	63 bp	−	–
D-loop	Control region	3,627	4,815	1,189 bp	–	38.9%
tRNA-Leu (UUR)	Transfer RNA	4,816	4,888	73 bp	+	–
tRNA-Gln	Transfer RNA	4,889	4,958	70 bp	−	–
tRNA-Met	Transfer RNA	4,959	5,021	63 bp	+	–
ND2	Protein-coding gene	5,022	6,051	1,030 bp	+	42.9%
tRNA-Trp	Transfer RNA	6,052	6,116	65 bp	+	–
tRNA-Ala	Transfer RNA	6,117	6,181	65 bp	−	–
tRNA-Asn	Transfer RNA	6,182	6,254	73 bp	−	–
tRNA-Cys	Transfer RNA	6,289	6,348	60 bp	−	–
tRNA-Tyr	Transfer RNA	6,349	6,409	61 bp	−	–
COX1	Protein-coding gene	6,411	7,956	1,546 bp	+	43.9%
tRNA-Ser (UCN)	Transfer RNA	8,003	8,070	68 bp	−	–
tRNA-Asp	Transfer RNA	8,071	8,133	63 bp	+	–
COX2	Protein-coding gene	8,134	8,818	685 bp	+	46.0%
tRNA-Lys	Transfer RNA	8,819	8,881	63 bp	+	–
ATP8	Protein-coding gene	8,882	9,046	165 bp	+	34.6%
ATP6	Protein-coding gene	9,037	9,716	680 bp	+	41.6%
COX3	Protein-coding gene	9,717	10,500	784 bp	+	44.0%
tRNA-Gly	Transfer RNA	10,501	10,561	61 bp	+	–
ND3	Protein-coding gene	10,562	10,904	343 bp	+	42.0%
tRNA-Arg	Transfer RNA	10,905	10,967	63 bp	+	–
ND4L	Protein-coding gene	10,968	11,257	290 bp	+	35.9%
ND4	Protein-coding gene	11,258	12,595	1,338 bp	+	42.9%
tRNA-His	Transfer RNA	12,597	12,658	62 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	12,659	12,714	56 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	12,715	12,785	71 bp	+	–
ND5	Protein-coding gene	12,787	14,574	1,788 bp	+	41.8%
ND6	Protein-coding gene	14,566	15,081	516 bp	−	42.1%
tRNA-Glu	Transfer RNA	15,082	15,144	63 bp	−	–
CYTB	Protein-coding gene	15,145	16,258	1,114 bp	+	42.6%
tRNA-Thr	Transfer RNA	16,259	16,324	66 bp	+	–
D-loop	Control region	16,357	17,388	1,032 bp	–	38.9%