Oxygymnocypris stewartii
GC content
44.70%
Whole genome
Non-coding
1,055 bp
D-loop 935 bp
Where Oxygymnocypris stewartii sits among 2,335 species
Whole-genome GC content against maximum lifespan. Oxygymnocypris stewartii has the 654th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,646 bp
- GC skew (G − C) / (G + C)
- −0.189
- AT skew (A − T) / (A + T)
- +0.036
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,646 bp
Protein-coding11,391 bp
12S rRNA959 bp
16S rRNA1,682 bp
All tRNA1,559 bp
D-loop935 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.03% | −0.230 | −0.095 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 46.51% | −0.300 | +0.048 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.97% | −0.150 | −0.098 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.85% | −0.234 | +0.052 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 40.00% | −0.273 | +0.091 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 39.91% | −0.231 | −0.071 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.73% | −0.220 | −0.023 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.55% | −0.158 | −0.117 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.17% | −0.221 | −0.135 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.95% | −0.196 | −0.031 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 44.41% | −0.259 | −0.008 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.94% | −0.347 | +0.386 | |||||
| CYTBCytochrome b | 1,141 bp | 42.68% | −0.277 | −0.055 | |||||
| 12S rRNA12S ribosomal RNA | 959 bp | 50.05% | −0.071 | +0.198 | |||||
| 16S rRNA16S ribosomal RNA | 1,682 bp | 45.07% | −0.040 | +0.273 | |||||
| D-loopControl region (D-loop) | 935 bp | 36.04% | −0.193 | +0.007 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU123
UUC110
Leu L16.3%
UUA92
UUG47
CUU129
CUC93
CUA185
CUG73
Ile I7.1%
AUU170
AUC100
Met M4.7%
AUA112
AUG66
Val V6.7%
GUU74
GUC45
GUA95
GUG42
Ser S6.4%
UCU38
UCC55
UCA76
UCG15
AGU15
AGC43
Pro P5.5%
CCU40
CCC64
CCA92
CCG13
Thr T7.8%
ACU55
ACC102
ACA113
ACG26
Ala A9.1%
GCU75
GCC133
GCA117
GCG21
Tyr Y3.0%
UAU63
UAC51
His H2.7%
CAU37
CAC65
Gln Q2.6%
CAA73
CAG25
Asn N2.9%
AAU46
AAC66
Lys K2.0%
AAA48
AAG28
Asp D1.9%
GAU21
GAC51
Glu E2.8%
GAA81
GAG24
Cys C0.7%
UGU9
UGC16
Trp W3.1%
UGA88
UGG30
Arg R1.9%
CGU8
CGC13
CGA36
CGG17
Gly G6.6%
GGU38
GGC56
GGA99
GGG56
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_022718.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,028 | 959 bp | + | 50.1% |
| tRNA-Val | Transfer RNA | 1,029 | 1,100 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,101 | 2,782 | 1,682 bp | + | 45.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,783 | 2,858 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,860 | 3,834 | 975 bp | + | 49.0% |
| tRNA-Ile | Transfer RNA | 3,838 | 3,909 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,908 | 3,978 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,981 | 4,049 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,050 | 5,094 | 1,045 bp | + | 46.5% |
| tRNA-Trp | Transfer RNA | 5,095 | 5,165 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,167 | 5,235 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,237 | 5,309 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,343 | 5,408 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,408 | 5,478 | 71 bp | + | – |
| COX1 | Protein-coding gene | 5,480 | 7,030 | 1,551 bp | + | 44.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,031 | 7,101 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,105 | 7,176 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,190 | 7,880 | 691 bp | + | 43.9% |
| tRNA-Lys | Transfer RNA | 7,881 | 7,956 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,958 | 8,122 | 165 bp | + | 40.0% |
| ATP6 | Protein-coding gene | 8,116 | 8,799 | 684 bp | + | 39.9% |
| COX3 | Protein-coding gene | 8,799 | 9,583 | 785 bp | + | 45.7% |
| tRNA-Gly | Transfer RNA | 9,584 | 9,655 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,656 | 10,004 | 349 bp | + | 43.6% |
| tRNA-Arg | Transfer RNA | 10,005 | 10,074 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,075 | 10,371 | 297 bp | + | 50.2% |
| ND4 | Protein-coding gene | 10,365 | 11,745 | 1,381 bp | + | 44.0% |
| tRNA-His | Transfer RNA | 11,746 | 11,814 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,815 | 11,883 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,885 | 11,957 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,961 | 13,784 | 1,824 bp | + | 44.4% |
| ND6 | Protein-coding gene | 13,781 | 14,302 | 522 bp | − | 46.9% |
| tRNA-Glu | Transfer RNA | 14,303 | 14,371 | 69 bp | + | – |
| CYTB | Protein-coding gene | 14,376 | 15,516 | 1,141 bp | + | 42.7% |
| tRNA-Thr | Transfer RNA | 15,517 | 15,588 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,642 | 15,711 | 70 bp | − | – |
| D-loop | Control region | 15,712 | 16,646 | 935 bp | – | 36.0% |