MitoAge

Pagellus bogaraveo

Blackspot seabream

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Maximum lifespan
15 yr
AnAge record
mtDNA size
16,941 bp
RefSeq NC_009502.1
GC content
46.38%
Whole genome
Non-coding
1,338 bp
D-loop 1,195 bp

Where Blackspot seabream sits among 2,335 species

Whole-genome GC content against maximum lifespan. Blackspot seabream has the 1,213th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Blackspot seabream
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,941 bp
GC skew (G − C) / (G + C)
−0.256
AT skew (A − T) / (A + T)
+0.005

Life history

Maximum lifespan
15 years
Adult weight
2.2 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04393)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,941 bp
Protein-coding11,415 bp
12S rRNA951 bp
16S rRNA1,697 bp
All tRNA1,553 bp
D-loop1,195 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp21.8%29.1%16.6%32.4%49.03%−0.322−0.143
ND2NADH dehydrogenase subunit 21,045 bp24.3%26.4%13.8%35.5%49.28%−0.441−0.042
COX1Cytochrome c oxidase subunit I1,566 bp24.2%29.3%19.0%27.5%46.49%−0.181−0.095
COX2Cytochrome c oxidase subunit II691 bp27.2%28.7%16.8%27.4%44.14%−0.239−0.026
ATP8ATP synthase F0 subunit 8165 bp29.1%23.0%12.7%35.2%47.88%−0.468+0.116
ATP6ATP synthase F0 subunit 6684 bp23.7%31.3%13.6%31.4%45.03%−0.396−0.138
COX3Cytochrome c oxidase subunit III785 bp23.9%27.5%18.0%30.6%48.54%−0.260−0.069
ND3NADH dehydrogenase subunit 3349 bp19.5%30.4%16.0%34.1%50.14%−0.360−0.218
ND4LNADH dehydrogenase subunit 4L297 bp20.2%29.6%15.8%34.3%50.17%−0.369−0.189
ND4NADH dehydrogenase subunit 41,375 bp23.9%26.8%16.1%33.2%49.38%−0.346−0.057
ND5NADH dehydrogenase subunit 51,839 bp26.9%28.3%14.7%30.0%44.75%−0.341−0.026
ND6NADH dehydrogenase subunit 6522 bp38.5%15.1%14.0%32.4%46.36%−0.397+0.436
CYTBCytochrome b1,141 bp24.6%30.0%15.5%29.9%45.40%−0.317−0.098
12S rRNA12S ribosomal RNA951 bp29.7%22.2%22.6%25.6%48.16%−0.061+0.144
16S rRNA16S ribosomal RNA1,697 bp32.5%20.9%20.9%25.7%46.61%−0.102+0.216
D-loopControl region (D-loop)1,195 bp32.2%30.4%16.0%21.4%37.41%−0.145+0.029

Codon usage

Counts per codon, darker is more frequent

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU119
UUC119
Leu L17.3%
UUA84
UUG27
CUU168
CUC177
CUA139
CUG64
Ile I6.8%
AUU140
AUC119
Met M4.0%
AUA74
AUG79
Val V6.2%
GUU83
GUC71
GUA57
GUG26
Ser S7.0%
UCU53
UCC89
UCA63
UCG6
AGU16
AGC40
Pro P5.7%
CCU51
CCC90
CCA62
CCG15
Thr T7.1%
ACU50
ACC123
ACA85
ACG14
Ala A9.1%
GCU68
GCC150
GCA105
GCG23
Tyr Y3.0%
UAU44
UAC69
His H2.8%
CAU26
CAC82
Gln Q2.4%
CAA75
CAG18
Asn N2.9%
AAU42
AAC70
Lys K2.0%
AAA68
AAG10
Asp D2.0%
GAU23
GAC54
Glu E2.7%
GAA75
GAG27
Cys C0.7%
UGU6
UGC20
Trp W3.1%
UGA104
UGG14
Arg R2.0%
CGU13
CGC15
CGA40
CGG9
Gly G6.5%
GGU34
GGC84
GGA87
GGG44
Stop 0.2%
UAA4
UAG2
AGA0
AGG1

Genome map

38 annotated features in NC_009502.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,1951,195 bp–37.4%
tRNA-PheTransfer RNA1,1961,26368 bp+–
12S rRNARibosomal RNA1,2642,214951 bp+48.2%
tRNA-ValTransfer RNA2,2152,28672 bp+–
16S rRNARibosomal RNA2,2873,9831,697 bp+46.6%
tRNA-Leu (UUR)Transfer RNA3,9844,05673 bp+–
ND1Protein-coding gene4,0575,031975 bp+49.0%
tRNA-IleTransfer RNA5,0365,10570 bp+–
tRNA-GlnTransfer RNA5,1055,17571 bp−–
tRNA-MetTransfer RNA5,1755,24470 bp+–
ND2Protein-coding gene5,2456,2891,045 bp+49.3%
tRNA-TrpTransfer RNA6,2906,35970 bp+–
tRNA-AlaTransfer RNA6,3606,42869 bp−–
tRNA-AsnTransfer RNA6,4306,50273 bp−–
tRNA-CysTransfer RNA6,6186,68467 bp−–
tRNA-TyrTransfer RNA6,6846,75370 bp−–
COX1Protein-coding gene6,7558,3201,566 bp+46.5%
tRNA-Ser (UCN)Transfer RNA8,3088,37871 bp−–
tRNA-AspTransfer RNA8,3828,45473 bp+–
COX2Protein-coding gene8,4639,153691 bp+44.1%
tRNA-LysTransfer RNA9,1549,22774 bp+–
ATP8Protein-coding gene9,2299,393165 bp+47.9%
ATP6Protein-coding gene9,38710,070684 bp+45.0%
COX3Protein-coding gene10,07010,854785 bp+48.5%
tRNA-GlyTransfer RNA10,85510,92672 bp+–
ND3Protein-coding gene10,92711,275349 bp+50.1%
tRNA-ArgTransfer RNA11,27611,34772 bp+–
ND4LProtein-coding gene11,34811,644297 bp+50.2%
ND4Protein-coding gene11,63813,0121,375 bp+49.4%
tRNA-HisTransfer RNA13,01313,08169 bp+–
tRNA-Ser (AGY)Transfer RNA13,08213,14968 bp+–
tRNA-Leu (CUN)Transfer RNA13,15513,22773 bp+–
ND5Protein-coding gene13,22815,0661,839 bp+44.8%
ND6Protein-coding gene15,06315,584522 bp−46.4%
tRNA-GluTransfer RNA15,58515,65369 bp−–
CYTBProtein-coding gene15,65916,7991,141 bp+45.4%
tRNA-ThrTransfer RNA16,80016,87172 bp+–
tRNA-ProTransfer RNA16,87116,94171 bp−–

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