Pagellus erythrinus
Common pandora
GC content
45.00%
Whole genome
Non-coding
1,212 bp
D-loop 1,154 bp
Where Common pandora sits among 2,335 species
Whole-genome GC content against maximum lifespan. Common pandora has the 927th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,828 bp
- GC skew (G − C) / (G + C)
- −0.252
- AT skew (A − T) / (A + T)
- +0.000
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,828 bp
Protein-coding11,422 bp
12S rRNA954 bp
16S rRNA1,696 bp
All tRNA1,557 bp
D-loop1,154 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.54% | −0.315 | −0.092 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.90% | −0.469 | −0.061 | |||||
| COX1Cytochrome c oxidase subunit I | 1,566 bp | 45.15% | −0.165 | −0.115 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.42% | −0.280 | +0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.62% | −0.400 | +0.068 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.57% | −0.383 | −0.187 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.37% | −0.264 | −0.055 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.71% | −0.337 | −0.290 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.17% | −0.356 | −0.162 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.42% | −0.357 | −0.065 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.67% | −0.340 | −0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.87% | −0.293 | +0.345 | |||||
| CYTBCytochrome b | 1,141 bp | 44.26% | −0.291 | −0.123 | |||||
| 12S rRNA12S ribosomal RNA | 954 bp | 48.01% | −0.066 | +0.169 | |||||
| 16S rRNA16S ribosomal RNA | 1,696 bp | 45.46% | −0.074 | +0.235 | |||||
| D-loopControl region (D-loop) | 1,154 bp | 37.52% | −0.233 | +0.018 |
Codon usage
Counts per codon, darker is more frequent3,812 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.5%
UUU105
UUC142
Leu L17.3%
UUA88
UUG15
CUU193
CUC143
CUA164
CUG56
Ile I7.1%
AUU188
AUC82
Met M4.0%
AUA89
AUG64
Val V5.8%
GUU75
GUC62
GUA67
GUG19
Ser S6.7%
UCU58
UCC58
UCA77
UCG8
AGU13
AGC41
Pro P5.6%
CCU48
CCC94
CCA62
CCG10
Thr T7.2%
ACU61
ACC108
ACA98
ACG6
Ala A9.4%
GCU75
GCC164
GCA107
GCG14
Tyr Y2.9%
UAU53
UAC58
His H2.9%
CAU36
CAC73
Gln Q2.5%
CAA76
CAG21
Asn N3.0%
AAU54
AAC60
Lys K2.0%
AAA65
AAG13
Asp D2.0%
GAU21
GAC56
Glu E2.6%
GAA76
GAG23
Cys C0.7%
UGU14
UGC13
Trp W3.1%
UGA102
UGG17
Arg R2.0%
CGU7
CGC18
CGA41
CGG10
Gly G6.4%
GGU46
GGC74
GGA88
GGG36
Stop 0.2%
UAA5
UAG1
AGA0
AGG1
Genome map
38 annotated features in NC_037732.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 161 | 228 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 229 | 1,182 | 954 bp | + | 48.0% |
| tRNA-Val | Transfer RNA | 1,183 | 1,254 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,255 | 2,950 | 1,696 bp | + | 45.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,951 | 3,023 | 73 bp | + | – |
| ND1 | Protein-coding gene | 3,024 | 3,998 | 975 bp | + | 45.5% |
| tRNA-Ile | Transfer RNA | 4,004 | 4,073 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,073 | 4,143 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,143 | 4,212 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,213 | 5,258 | 1,046 bp | + | 47.9% |
| tRNA-Trp | Transfer RNA | 5,259 | 5,328 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,329 | 5,397 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,399 | 5,471 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,507 | 5,572 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,573 | 5,642 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,644 | 7,209 | 1,566 bp | + | 45.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,197 | 7,267 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,270 | 7,342 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,351 | 8,041 | 691 bp | + | 43.4% |
| tRNA-Lys | Transfer RNA | 8,042 | 8,115 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,117 | 8,284 | 168 bp | + | 47.6% |
| ATP6 | Protein-coding gene | 8,275 | 8,958 | 684 bp | + | 43.6% |
| COX3 | Protein-coding gene | 8,958 | 9,742 | 785 bp | + | 46.4% |
| tRNA-Gly | Transfer RNA | 9,743 | 9,813 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,814 | 10,162 | 349 bp | + | 46.7% |
| tRNA-Arg | Transfer RNA | 10,163 | 10,233 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,234 | 10,530 | 297 bp | + | 50.2% |
| ND4 | Protein-coding gene | 10,524 | 11,904 | 1,381 bp | + | 46.4% |
| tRNA-His | Transfer RNA | 11,905 | 11,973 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,974 | 12,041 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,048 | 12,120 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,121 | 13,959 | 1,839 bp | + | 43.7% |
| ND6 | Protein-coding gene | 13,956 | 14,477 | 522 bp | − | 43.9% |
| tRNA-Glu | Transfer RNA | 14,478 | 14,546 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,551 | 15,691 | 1,141 bp | + | 44.3% |
| tRNA-Thr | Transfer RNA | 15,692 | 15,765 | 74 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,766 | 15,839 | 74 bp | − | – |
| D-loop | Control region | 15,835 | 160 | 1,154 bp | – | 37.5% |