Pagothenia borchgrevinki
Bald notothen
GC content
45.43%
Whole genome
Non-coding
1,705 bp
Including the D-loop
Where Bald notothen sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bald notothen has the 1,822nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,299 bp
- GC skew (G − C) / (G + C)
- −0.100
- AT skew (A − T) / (A + T)
- −0.080
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- questionable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,299 bp
Protein-coding11,409 bp
12S rRNA948 bp
16S rRNA1,690 bp
All tRNA1,547 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.49% | −0.231 | −0.145 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.95% | −0.121 | −0.228 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.26% | −0.060 | −0.206 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.13% | −0.094 | −0.140 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.67% | −0.086 | −0.061 | |||||
| ATP6ATP synthase F0 subunit 6 | 696 bp | 45.40% | −0.139 | −0.174 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.35% | −0.073 | −0.184 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.57% | −0.133 | −0.375 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.171 | −0.223 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.91% | −0.088 | −0.197 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.41% | −0.085 | −0.161 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 54.14% | −0.167 | +0.202 | |||||
| CYTBCytochrome b | 1,141 bp | 46.71% | −0.118 | −0.217 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 46.84% | −0.041 | +0.127 | |||||
| 16S rRNA16S ribosomal RNA | 1,690 bp | 45.44% | −0.081 | +0.171 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU145
UUC91
Leu L16.4%
UUA109
UUG66
CUU175
CUC94
CUA101
CUG79
Ile I6.4%
AUU175
AUC69
Met M4.1%
AUA67
AUG90
Val V7.6%
GUU106
GUC46
GUA80
GUG56
Ser S6.2%
UCU64
UCC50
UCA43
UCG22
AGU31
AGC28
Pro P5.7%
CCU67
CCC93
CCA35
CCG24
Thr T6.7%
ACU66
ACC72
ACA84
ACG32
Ala A9.8%
GCU112
GCC108
GCA110
GCG44
Tyr Y2.9%
UAU50
UAC59
His H2.6%
CAU55
CAC43
Gln Q2.7%
CAA60
CAG42
Asn N2.8%
AAU54
AAC53
Lys K2.1%
AAA47
AAG33
Asp D2.1%
GAU36
GAC44
Glu E2.5%
GAA38
GAG56
Cys C1.0%
UGU23
UGC14
Trp W3.1%
UGA62
UGG56
Arg R2.0%
CGU16
CGC9
CGA35
CGG17
Gly G7.0%
GGU56
GGC65
GGA24
GGG122
Stop 0.2%
UAA4
UAG2
AGA0
AGG1
Genome map
37 annotated features in NC_030320.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 46.8% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,778 | 1,690 bp | + | 45.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,779 | 2,852 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,853 | 3,827 | 975 bp | + | 47.5% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,901 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,901 | 3,972 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,040 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,041 | 5,086 | 1,046 bp | + | 49.0% |
| tRNA-Trp | Transfer RNA | 5,087 | 5,157 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,159 | 5,227 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,229 | 5,301 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,327 | 5,392 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,393 | 5,463 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,465 | 7,015 | 1,551 bp | + | 45.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,016 | 7,086 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,088 | 7,158 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,161 | 7,851 | 691 bp | + | 43.1% |
| tRNA-Lys | Transfer RNA | 7,852 | 7,925 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,927 | 8,094 | 168 bp | + | 41.7% |
| ATP6 | Protein-coding gene | 8,073 | 8,768 | 696 bp | + | 45.4% |
| COX3 | Protein-coding gene | 8,801 | 9,585 | 785 bp | + | 45.4% |
| tRNA-Gly | Transfer RNA | 9,586 | 9,655 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,656 | 10,004 | 349 bp | + | 49.6% |
| tRNA-Arg | Transfer RNA | 10,005 | 10,073 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,074 | 10,370 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,364 | 11,744 | 1,381 bp | + | 45.9% |
| tRNA-His | Transfer RNA | 11,745 | 11,813 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,814 | 11,880 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,885 | 11,958 | 74 bp | + | – |
| ND5 | Protein-coding gene | 11,959 | 13,797 | 1,839 bp | + | 45.4% |
| CYTB | Protein-coding gene | 13,840 | 14,980 | 1,141 bp | + | 46.7% |
| tRNA-Thr | Transfer RNA | 14,981 | 15,052 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,052 | 15,121 | 70 bp | − | – |
| ND6 | Protein-coding gene | 15,501 | 16,019 | 519 bp | − | 54.1% |
| tRNA-Glu | Transfer RNA | 16,020 | 16,087 | 68 bp | − | – |