Pagrus pagrus
Red porgy
GC content
45.74%
Whole genome
Non-coding
1,071 bp
D-loop 1,008 bp
Where Red porgy sits among 2,335 species
Whole-genome GC content against maximum lifespan. Red porgy has the 593rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,685 bp
- GC skew (G − C) / (G + C)
- −0.241
- AT skew (A − T) / (A + T)
- +0.004
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,685 bp
Protein-coding11,422 bp
12S rRNA954 bp
16S rRNA1,696 bp
All tRNA1,555 bp
D-loop1,008 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.59% | −0.302 | −0.088 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.66% | −0.379 | −0.084 | |||||
| COX1Cytochrome c oxidase subunit I | 1,566 bp | 45.98% | −0.164 | −0.118 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.15% | −0.231 | −0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 51.19% | −0.395 | +0.073 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 45.83% | −0.393 | −0.178 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.86% | −0.256 | −0.064 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.57% | −0.387 | −0.227 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.366 | −0.145 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.78% | −0.353 | −0.048 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.26% | −0.346 | +0.003 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.87% | −0.258 | +0.324 | |||||
| CYTBCytochrome b | 1,141 bp | 45.22% | −0.302 | −0.104 | |||||
| 12S rRNA12S ribosomal RNA | 954 bp | 47.69% | −0.055 | +0.162 | |||||
| 16S rRNA16S ribosomal RNA | 1,696 bp | 46.11% | −0.079 | +0.254 | |||||
| D-loopControl region (D-loop) | 1,008 bp | 36.91% | −0.151 | +0.009 |
Codon usage
Counts per codon, darker is more frequent3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU114
UUC128
Leu L17.3%
UUA88
UUG18
CUU180
CUC161
CUA155
CUG58
Ile I7.0%
AUU176
AUC90
Met M3.9%
AUA83
AUG67
Val V6.0%
GUU73
GUC65
GUA71
GUG21
Ser S6.6%
UCU49
UCC66
UCA72
UCG11
AGU11
AGC44
Pro P5.6%
CCU34
CCC104
CCA66
CCG10
Thr T7.3%
ACU62
ACC105
ACA95
ACG16
Ala A9.5%
GCU71
GCC161
GCA114
GCG16
Tyr Y2.9%
UAU55
UAC56
His H2.8%
CAU25
CAC83
Gln Q2.6%
CAA75
CAG24
Asn N2.9%
AAU56
AAC56
Lys K2.1%
AAA62
AAG17
Asp D2.0%
GAU17
GAC58
Glu E2.7%
GAA72
GAG29
Cys C0.7%
UGU9
UGC18
Trp W3.1%
UGA102
UGG17
Arg R2.0%
CGU15
CGC15
CGA38
CGG8
Gly G6.4%
GGU36
GGC80
GGA80
GGG47
Stop 0.2%
UAA3
UAG2
AGA0
AGG1
Genome map
38 annotated features in NC_072936.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,022 | 954 bp | + | 47.7% |
| tRNA-Val | Transfer RNA | 1,023 | 1,094 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,790 | 1,696 bp | + | 46.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,791 | 2,863 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,864 | 3,838 | 975 bp | + | 47.6% |
| tRNA-Ile | Transfer RNA | 3,844 | 3,913 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,914 | 3,983 | 70 bp | − | – |
| tRNA-Met | Transfer RNA | 3,983 | 4,052 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,053 | 5,098 | 1,046 bp | + | 48.7% |
| tRNA-Trp | Transfer RNA | 5,099 | 5,168 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,169 | 5,237 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,239 | 5,311 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,348 | 5,413 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,414 | 5,485 | 72 bp | − | – |
| COX1 | Protein-coding gene | 5,486 | 7,051 | 1,566 bp | + | 46.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,039 | 7,109 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,112 | 7,184 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,193 | 7,883 | 691 bp | + | 45.2% |
| tRNA-Lys | Transfer RNA | 7,884 | 7,957 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,959 | 8,126 | 168 bp | + | 51.2% |
| ATP6 | Protein-coding gene | 8,117 | 8,799 | 683 bp | + | 45.8% |
| COX3 | Protein-coding gene | 8,800 | 9,584 | 785 bp | + | 45.9% |
| tRNA-Gly | Transfer RNA | 9,585 | 9,656 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,657 | 10,005 | 349 bp | + | 49.6% |
| tRNA-Arg | Transfer RNA | 10,006 | 10,076 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,077 | 10,373 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,367 | 11,747 | 1,381 bp | + | 46.8% |
| tRNA-His | Transfer RNA | 11,748 | 11,816 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,817 | 11,884 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,891 | 11,963 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,964 | 13,802 | 1,839 bp | + | 44.3% |
| ND6 | Protein-coding gene | 13,799 | 14,320 | 522 bp | − | 43.9% |
| tRNA-Glu | Transfer RNA | 14,321 | 14,389 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,394 | 15,534 | 1,141 bp | + | 45.2% |
| tRNA-Thr | Transfer RNA | 15,535 | 15,608 | 74 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,608 | 15,677 | 70 bp | − | – |
| D-loop | Control region | 15,678 | 16,685 | 1,008 bp | – | 36.9% |