Palea steindachneri
Wattle-necked softshell turtle
GC content
38.63%
Whole genome
Non-coding
1,807 bp
D-loop 1,736 bp
Where Wattle-necked softshell turtle sits among 2,335 species
Whole-genome GC content against maximum lifespan. Wattle-necked softshell turtle has the 240th longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome17,243 bp
- GC skew (G − C) / (G + C)
- −0.364
- AT skew (A − T) / (A + T)
- +0.136
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,243 bp
Protein-coding11,325 bp
12S rRNA974 bp
16S rRNA1,609 bp
All tRNA1,541 bp
D-loop1,736 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 973 bp | 40.08% | −0.431 | +0.050 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,039 bp | 37.44% | −0.517 | +0.225 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 41.29% | −0.213 | −0.001 | |||||
| COX2Cytochrome c oxidase subunit II | 687 bp | 36.97% | −0.362 | +0.178 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 35.76% | −0.729 | +0.264 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 38.45% | −0.498 | +0.145 | |||||
| COX3Cytochrome c oxidase subunit III | 781 bp | 43.28% | −0.314 | +0.093 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 39.26% | −0.547 | +0.123 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 35.02% | −0.558 | −0.016 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 37.15% | −0.509 | +0.152 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,779 bp | 39.29% | −0.525 | +0.167 | |||||
| ND6NADH dehydrogenase subunit 6 | 528 bp | 38.07% | −0.632 | +0.541 | |||||
| CYTBCytochrome b | 1,140 bp | 40.00% | −0.478 | +0.091 | |||||
| 12S rRNA12S ribosomal RNA | 974 bp | 41.38% | −0.181 | +0.264 | |||||
| 16S rRNA16S ribosomal RNA | 1,609 bp | 38.29% | −0.175 | +0.315 | |||||
| D-loopControl region (D-loop) | 1,736 bp | 34.27% | −0.230 | −0.106 |
Codon usage
Counts per codon, darker is more frequent3,781 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.7%
UUU89
UUC125
Leu L15.7%
UUA165
UUG14
CUU58
CUC60
CUA272
CUG25
Ile I8.3%
AUU151
AUC163
Met M6.3%
AUA209
AUG30
Val V4.3%
GUU35
GUC27
GUA84
GUG17
Ser S7.4%
UCU39
UCC46
UCA142
UCG2
AGU16
AGC34
Pro P5.6%
CCU31
CCC44
CCA132
CCG3
Thr T10.4%
ACU57
ACC148
ACA183
ACG4
Ala A6.1%
GCU57
GCC94
GCA78
GCG2
Tyr Y3.3%
UAU50
UAC73
His H2.8%
CAU38
CAC66
Gln Q2.7%
CAA94
CAG7
Asn N4.4%
AAU47
AAC118
Lys K2.4%
AAA92
AAG0
Asp D1.7%
GAU23
GAC40
Glu E2.2%
GAA76
GAG6
Cys C0.7%
UGU9
UGC17
Trp W2.9%
UGA102
UGG8
Arg R1.8%
CGU7
CGC11
CGA47
CGG4
Gly G5.3%
GGU30
GGC58
GGA80
GGG34
Stop 0.2%
UAA6
UAG0
AGA2
AGG0
Genome map
38 annotated features in NC_013841.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (38.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,044 | 974 bp | + | 41.4% |
| tRNA-Val | Transfer RNA | 1,045 | 1,113 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,112 | 2,720 | 1,609 bp | + | 38.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,721 | 2,796 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,794 | 3,766 | 973 bp | + | 40.1% |
| tRNA-Ile | Transfer RNA | 3,768 | 3,837 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,837 | 3,907 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,907 | 3,975 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,976 | 5,014 | 1,039 bp | + | 37.4% |
| tRNA-Trp | Transfer RNA | 5,015 | 5,088 | 74 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,097 | 5,165 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,167 | 5,240 | 74 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,270 | 5,335 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,336 | 5,402 | 67 bp | − | – |
| COX1 | Protein-coding gene | 5,404 | 6,948 | 1,545 bp | + | 41.3% |
| tRNA-Ser (UCN) | Transfer RNA | 6,944 | 7,014 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,015 | 7,083 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,084 | 7,770 | 687 bp | + | 37.0% |
| tRNA-Lys | Transfer RNA | 7,772 | 7,844 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,846 | 8,010 | 165 bp | + | 35.8% |
| ATP6 | Protein-coding gene | 8,001 | 8,684 | 684 bp | + | 38.5% |
| COX3 | Protein-coding gene | 8,684 | 9,464 | 781 bp | + | 43.3% |
| tRNA-Gly | Transfer RNA | 9,468 | 9,536 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,537 | 9,886 | 350 bp | + | 39.3% |
| tRNA-Arg | Transfer RNA | 9,887 | 9,956 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,957 | 10,253 | 297 bp | + | 35.0% |
| ND4 | Protein-coding gene | 10,247 | 11,627 | 1,381 bp | + | 37.2% |
| tRNA-His | Transfer RNA | 11,628 | 11,697 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,698 | 11,758 | 61 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,759 | 11,831 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,832 | 13,610 | 1,779 bp | + | 39.3% |
| ND6 | Protein-coding gene | 13,606 | 14,133 | 528 bp | − | 38.1% |
| tRNA-Glu | Transfer RNA | 14,131 | 14,198 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,202 | 15,341 | 1,140 bp | + | 40.0% |
| tRNA-Thr | Transfer RNA | 15,345 | 15,418 | 74 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,438 | 15,507 | 70 bp | − | – |
| D-loop | Control region | 15,508 | 17,243 | 1,736 bp | – | 34.3% |