Paleosuchus palpebrosus
Dwarf caiman
GC content
47.60%
Whole genome
Non-coding
154 bp
Including the D-loop
Where Dwarf caiman sits among 2,335 species
Whole-genome GC content against maximum lifespan. Dwarf caiman has the 678th longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome14,935 bp
- GC skew (G − C) / (G + C)
- −0.430
- AT skew (A − T) / (A + T)
- +0.171
Life history
- Maximum lifespan
- 24.1 years
- Adult weight
- 5.9 kg
- Female sexual maturity
- 10 years
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03249)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome14,935 bp
Protein-coding11,344 bp
12S rRNA502 bp
16S rRNA1,587 bp
All tRNA1,349 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 966 bp | 49.59% | −0.453 | +0.043 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,044 bp | 46.55% | −0.498 | +0.108 | |||||
| COX1Cytochrome c oxidase subunit I | 1,564 bp | 47.00% | −0.361 | +0.088 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 46.66% | −0.445 | +0.172 | |||||
| ATP8ATP synthase F0 subunit 8 | 169 bp | 48.52% | −0.634 | +0.356 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.18% | −0.612 | +0.184 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 49.87% | −0.432 | +0.048 | |||||
| ND3NADH dehydrogenase subunit 3 | 348 bp | 44.54% | −0.419 | +0.005 | |||||
| ND4LNADH dehydrogenase subunit 4L | 294 bp | 50.34% | −0.608 | −0.027 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,371 bp | 48.80% | −0.495 | +0.151 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,806 bp | 46.07% | −0.534 | +0.199 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 50.19% | −0.649 | +0.623 | |||||
| CYTBCytochrome b | 1,137 bp | 50.22% | −0.464 | +0.057 | |||||
| 12S rRNA12S ribosomal RNA | 502 bp | 49.20% | −0.134 | +0.271 | |||||
| 16S rRNA16S ribosomal RNA | 1,587 bp | 46.25% | −0.229 | +0.315 |
Codon usage
Counts per codon, darker is more frequent3,791 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU64
UUC161
Leu L16.9%
UUA51
UUG25
CUU63
CUC202
CUA245
CUG55
Ile I7.1%
AUU88
AUC183
Met M5.0%
AUA140
AUG48
Val V4.6%
GUU30
GUC55
GUA65
GUG25
Ser S7.1%
UCU26
UCC111
UCA74
UCG6
AGU8
AGC44
Pro P6.2%
CCU16
CCC105
CCA108
CCG7
Thr T10.7%
ACU34
ACC192
ACA165
ACG14
Ala A7.6%
GCU25
GCC160
GCA95
GCG9
Tyr Y2.6%
UAU22
UAC77
His H3.0%
CAU11
CAC104
Gln Q2.3%
CAA79
CAG10
Asn N3.5%
AAU20
AAC114
Lys K2.5%
AAA81
AAG12
Asp D1.8%
GAU12
GAC57
Glu E2.2%
GAA71
GAG13
Cys C0.9%
UGU13
UGC22
Trp W2.7%
UGA83
UGG21
Arg R1.6%
CGU3
CGC14
CGA40
CGG5
Gly G5.2%
GGU16
GGC56
GGA82
GGG45
Stop 0.2%
UAA4
UAG2
AGA2
AGG1
Genome map
34 annotated features in NC_009729.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA19
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 34 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| 12S rRNA | Ribosomal RNA | 1 | 502 | 502 bp | + | 49.2% |
| tRNA-Val | Transfer RNA | 503 | 570 | 68 bp | + | – |
| 16S rRNA | Ribosomal RNA | 571 | 2,157 | 1,587 bp | + | 46.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,158 | 2,232 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,233 | 3,198 | 966 bp | + | 49.6% |
| tRNA-Ile | Transfer RNA | 3,198 | 3,269 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,268 | 3,338 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,338 | 3,405 | 68 bp | + | – |
| ND2 | Protein-coding gene | 3,407 | 4,450 | 1,044 bp | + | 46.6% |
| tRNA-Trp | Transfer RNA | 4,461 | 4,533 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 4,537 | 4,605 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 4,607 | 4,679 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 4,684 | 4,749 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 4,750 | 4,822 | 73 bp | − | – |
| COX1 | Protein-coding gene | 4,824 | 6,387 | 1,564 bp | + | 47.0% |
| tRNA-Ser (UCN) | Transfer RNA | 6,389 | 6,459 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,464 | 6,536 | 73 bp | + | – |
| COX2 | Protein-coding gene | 6,537 | 7,224 | 688 bp | + | 46.7% |
| tRNA-Lys | Transfer RNA | 7,225 | 7,310 | 86 bp | + | – |
| ATP8 | Protein-coding gene | 7,312 | 7,480 | 169 bp | + | 48.5% |
| ATP6 | Protein-coding gene | 7,464 | 8,147 | 684 bp | + | 45.2% |
| COX3 | Protein-coding gene | 8,147 | 8,930 | 784 bp | + | 49.9% |
| tRNA-Gly | Transfer RNA | 8,931 | 9,000 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,001 | 9,348 | 348 bp | + | 44.5% |
| tRNA-Arg | Transfer RNA | 9,357 | 9,426 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,428 | 9,721 | 294 bp | + | 50.3% |
| ND4 | Protein-coding gene | 9,715 | 11,085 | 1,371 bp | + | 48.8% |
| tRNA-Ser (AGY) | Transfer RNA | 11,095 | 11,156 | 62 bp | + | – |
| tRNA-His | Transfer RNA | 11,166 | 11,235 | 70 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,237 | 11,309 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,311 | 13,116 | 1,806 bp | + | 46.1% |
| ND6 | Protein-coding gene | 13,109 | 13,630 | 522 bp | − | 50.2% |
| tRNA-Glu | Transfer RNA | 13,631 | 13,699 | 69 bp | − | – |
| CYTB | Protein-coding gene | 13,704 | 14,840 | 1,137 bp | + | 50.2% |