Pama pama
Pama croaker
GC content
44.20%
Whole genome
Non-coding
904 bp
D-loop 835 bp
Where Pama croaker sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pama croaker has the 2,145th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,513 bp
- GC skew (G − C) / (G + C)
- −0.338
- AT skew (A − T) / (A + T)
- +0.062
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,513 bp
Protein-coding11,413 bp
12S rRNA950 bp
16S rRNA1,703 bp
All tRNA1,548 bp
D-loop835 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.82% | −0.419 | −0.026 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 45.41% | −0.549 | +0.040 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 44.38% | −0.213 | −0.085 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.27% | −0.311 | +0.046 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 32.74% | −0.600 | +0.150 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.28% | −0.486 | −0.005 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.37% | −0.335 | −0.045 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.84% | −0.386 | −0.122 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.83% | −0.500 | −0.020 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.24% | −0.421 | +0.008 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.18% | −0.469 | +0.056 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.98% | −0.542 | +0.504 | |||||
| CYTBCytochrome b | 1,141 bp | 45.22% | −0.442 | −0.008 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 47.37% | −0.129 | +0.224 | |||||
| 16S rRNA16S ribosomal RNA | 1,703 bp | 44.92% | −0.176 | +0.232 | |||||
| D-loopControl region (D-loop) | 835 bp | 35.81% | −0.171 | 0.000 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU111
UUC119
Leu L18.0%
UUA121
UUG13
CUU146
CUC178
CUA198
CUG29
Ile I7.6%
AUU164
AUC124
Met M4.5%
AUA133
AUG37
Val V4.9%
GUU44
GUC44
GUA71
GUG26
Ser S6.3%
UCU30
UCC90
UCA64
UCG5
AGU10
AGC42
Pro P5.8%
CCU47
CCC93
CCA73
CCG7
Thr T8.7%
ACU52
ACC149
ACA127
ACG5
Ala A8.0%
GCU59
GCC148
GCA92
GCG6
Tyr Y2.9%
UAU58
UAC54
His H2.7%
CAU26
CAC78
Gln Q2.5%
CAA88
CAG7
Asn N3.4%
AAU44
AAC84
Lys K1.9%
AAA72
AAG2
Asp D1.9%
GAU23
GAC50
Glu E2.7%
GAA85
GAG16
Cys C0.7%
UGU10
UGC16
Trp W3.1%
UGA107
UGG11
Arg R2.0%
CGU7
CGC13
CGA50
CGG6
Gly G6.2%
GGU48
GGC86
GGA70
GGG34
Stop 0.2%
UAA5
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_080231.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,019 | 950 bp | + | 47.4% |
| tRNA-Val | Transfer RNA | 1,020 | 1,091 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,795 | 1,703 bp | + | 44.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,796 | 2,869 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,870 | 3,844 | 975 bp | + | 44.8% |
| tRNA-Ile | Transfer RNA | 3,849 | 3,918 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,918 | 3,988 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,988 | 4,056 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,057 | 5,102 | 1,046 bp | + | 45.4% |
| tRNA-Trp | Transfer RNA | 5,103 | 5,174 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,175 | 5,243 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,246 | 5,318 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,354 | 5,419 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,420 | 5,489 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,491 | 7,047 | 1,557 bp | + | 44.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,043 | 7,113 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,117 | 7,185 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,193 | 7,883 | 691 bp | + | 43.3% |
| tRNA-Lys | Transfer RNA | 7,884 | 7,957 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,959 | 8,126 | 168 bp | + | 32.7% |
| ATP6 | Protein-coding gene | 8,117 | 8,800 | 684 bp | + | 43.3% |
| COX3 | Protein-coding gene | 8,800 | 9,584 | 785 bp | + | 46.4% |
| tRNA-Gly | Transfer RNA | 9,585 | 9,655 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,656 | 10,004 | 349 bp | + | 43.8% |
| tRNA-Arg | Transfer RNA | 10,005 | 10,073 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,074 | 10,370 | 297 bp | + | 49.8% |
| ND4 | Protein-coding gene | 10,364 | 11,744 | 1,381 bp | + | 44.2% |
| tRNA-His | Transfer RNA | 11,745 | 11,813 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,814 | 11,881 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,889 | 11,961 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,962 | 13,800 | 1,839 bp | + | 43.2% |
| ND6 | Protein-coding gene | 13,797 | 14,318 | 522 bp | − | 46.0% |
| tRNA-Glu | Transfer RNA | 14,319 | 14,387 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,392 | 15,532 | 1,141 bp | + | 45.2% |
| tRNA-Thr | Transfer RNA | 15,533 | 15,604 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,609 | 15,678 | 70 bp | − | – |
| D-loop | Control region | 15,679 | 16,513 | 835 bp | – | 35.8% |