Pampus argenteus
Silver pomfret
GC content
40.83%
Whole genome
Non-coding
1,426 bp
D-loop 1,328 bp
Where Silver pomfret sits among 2,335 species
Whole-genome GC content against maximum lifespan. Silver pomfret has the 1,845th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,098 bp
- GC skew (G − C) / (G + C)
- −0.252
- AT skew (A − T) / (A + T)
- +0.026
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,098 bp
Protein-coding11,406 bp
12S rRNA954 bp
16S rRNA1,688 bp
All tRNA1,629 bp
D-loop1,328 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 42.87% | −0.359 | −0.016 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 41.78% | −0.396 | +0.025 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 41.18% | −0.134 | −0.103 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.23% | −0.259 | −0.017 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.10% | −0.344 | +0.135 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 38.30% | −0.336 | −0.137 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.31% | −0.206 | −0.074 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 41.55% | −0.352 | −0.098 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 43.77% | −0.415 | −0.066 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 41.42% | −0.332 | +0.004 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 39.86% | −0.381 | +0.007 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 38.12% | −0.387 | +0.356 | |||||
| CYTBCytochrome b | 1,137 bp | 41.78% | −0.356 | −0.063 | |||||
| 12S rRNA12S ribosomal RNA | 954 bp | 44.34% | −0.035 | +0.168 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 43.31% | −0.081 | +0.200 | |||||
| D-loopControl region (D-loop) | 1,328 bp | 32.68% | −0.272 | +0.020 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.5%
UUU121
UUC128
Leu L16.6%
UUA142
UUG27
CUU152
CUC79
CUA196
CUG36
Ile I8.0%
AUU216
AUC87
Met M4.6%
AUA128
AUG46
Val V5.7%
GUU67
GUC35
GUA96
GUG19
Ser S6.5%
UCU57
UCC49
UCA83
UCG7
AGU15
AGC37
Pro P5.5%
CCU65
CCC63
CCA71
CCG11
Thr T8.0%
ACU66
ACC108
ACA124
ACG7
Ala A8.4%
GCU80
GCC115
GCA114
GCG9
Tyr Y2.9%
UAU56
UAC56
His H2.8%
CAU38
CAC68
Gln Q2.5%
CAA83
CAG14
Asn N3.7%
AAU66
AAC74
Lys K2.0%
AAA70
AAG5
Asp D1.9%
GAU26
GAC47
Glu E2.7%
GAA87
GAG14
Cys C0.6%
UGU7
UGC17
Trp W3.1%
UGA104
UGG13
Arg R1.9%
CGU11
CGC6
CGA49
CGG8
Gly G5.9%
GGU45
GGC62
GGA76
GGG41
Stop 0.2%
UAA6
UAG1
AGA1
AGG0
Genome map
39 annotated features in NC_023466.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA23
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (40.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 39 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,023 | 954 bp | + | 44.3% |
| tRNA-Val | Transfer RNA | 1,024 | 1,096 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,097 | 2,784 | 1,688 bp | + | 43.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,785 | 2,858 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,859 | 3,833 | 975 bp | + | 42.9% |
| tRNA-Ile | Transfer RNA | 3,838 | 3,908 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,908 | 3,978 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,978 | 4,051 | 74 bp | + | – |
| tRNA-Met | Transfer RNA | 4,075 | 4,147 | 73 bp | + | – |
| ND2 | Protein-coding gene | 4,148 | 5,193 | 1,046 bp | + | 41.8% |
| tRNA-Trp | Transfer RNA | 5,194 | 5,264 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,267 | 5,335 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,337 | 5,409 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,445 | 5,510 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,511 | 5,577 | 67 bp | − | – |
| COX1 | Protein-coding gene | 5,579 | 7,132 | 1,554 bp | + | 41.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,128 | 7,198 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,202 | 7,271 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,280 | 7,970 | 691 bp | + | 40.2% |
| tRNA-Lys | Transfer RNA | 7,971 | 8,045 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 8,053 | 8,220 | 168 bp | + | 38.1% |
| ATP6 | Protein-coding gene | 8,211 | 8,894 | 684 bp | + | 38.3% |
| COX3 | Protein-coding gene | 8,894 | 9,678 | 785 bp | + | 43.3% |
| tRNA-Gly | Transfer RNA | 9,679 | 9,750 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,751 | 10,099 | 349 bp | + | 41.6% |
| tRNA-Arg | Transfer RNA | 10,100 | 10,169 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,170 | 10,466 | 297 bp | + | 43.8% |
| ND4 | Protein-coding gene | 10,460 | 11,840 | 1,381 bp | + | 41.4% |
| tRNA-His | Transfer RNA | 11,841 | 11,909 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,910 | 11,978 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,984 | 12,056 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,057 | 13,895 | 1,839 bp | + | 39.9% |
| ND6 | Protein-coding gene | 13,892 | 14,413 | 522 bp | − | 38.1% |
| tRNA-Glu | Transfer RNA | 14,414 | 14,482 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,488 | 15,624 | 1,137 bp | + | 41.8% |
| tRNA-Thr | Transfer RNA | 15,629 | 15,700 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,700 | 15,770 | 71 bp | − | – |
| D-loop | Control region | 15,771 | 17,098 | 1,328 bp | – | 32.7% |