MitoAge

Pan paniscus

Pygmy chimpanzee, or Bonobo

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Maximum lifespan
55 yr
AnAge record
mtDNA size
16,563 bp
RefSeq NC_001644.1
GC content
43.40%
Whole genome
Non-coding
1,208 bp
D-loop 1,121 bp

Where Pygmy chimpanzee, or Bonobo sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pygmy chimpanzee, or Bonobo has the 121st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Pygmy chimpanzee, or Bonobo
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,563 bp
GC skew (G − C) / (G + C)
−0.415
AT skew (A − T) / (A + T)
+0.107

Life history

Maximum lifespan
55 years
Adult weight
39.9 kg
Birth weight
1.3 kg
Female sexual maturity
8.7 years
Gestation or incubation
232 days
Litter or clutch size
1
Litters per year
0.2

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02790)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, tiny sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,563 bp
Protein-coding11,342 bp
12S rRNA950 bp
16S rRNA1,559 bp
All tRNA1,507 bp
D-loop1,121 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp29.6%25.5%11.0%33.8%44.82%−0.509+0.074
ND2NADH dehydrogenase subunit 21,044 bp32.1%25.6%8.5%33.8%42.34%−0.597+0.113
COX1Cytochrome c oxidase subunit I1,542 bp27.1%27.6%16.3%28.9%45.27%−0.278−0.009
COX2Cytochrome c oxidase subunit II684 bp29.4%26.0%14.2%30.4%44.59%−0.364+0.061
ATP8ATP synthase F0 subunit 8207 bp38.2%22.2%6.3%33.3%39.61%−0.683+0.264
ATP6ATP synthase F0 subunit 6681 bp30.0%26.7%10.7%32.6%43.32%−0.505+0.057
COX3Cytochrome c oxidase subunit III784 bp27.9%27.4%13.6%31.0%44.64%−0.389+0.009
ND3NADH dehydrogenase subunit 3346 bp30.3%29.2%10.1%30.3%40.46%−0.500+0.019
ND4LNADH dehydrogenase subunit 4L297 bp30.6%31.0%10.4%27.9%38.38%−0.456−0.005
ND4NADH dehydrogenase subunit 41,378 bp30.3%25.3%9.9%34.5%44.41%−0.556+0.089
ND5NADH dehydrogenase subunit 51,812 bp31.1%25.9%9.9%33.1%43.05%−0.538+0.091
ND6NADH dehydrogenase subunit 6525 bp37.5%21.0%7.2%34.3%41.52%−0.651+0.283
CYTBCytochrome b1,141 bp28.6%25.2%11.8%34.4%46.28%−0.489+0.064
12S rRNA12S ribosomal RNA950 bp33.2%22.0%18.9%25.9%44.84%−0.155+0.202
16S rRNA16S ribosomal RNA1,559 bp35.5%22.2%16.9%25.4%42.34%−0.200+0.230
D-loopControl region (D-loop)1,121 bp30.2%23.0%13.3%33.5%46.74%−0.431+0.136

Codon usage

Counts per codon, darker is more frequent

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.7%
UUU76
UUC141
Leu L17.0%
UUA80
UUG17
CUU64
CUC167
CUA286
CUG30
Ile I8.3%
AUU139
AUC175
Met M5.4%
AUA172
AUG34
Val V4.6%
GUU38
GUC49
GUA73
GUG14
Ser S7.3%
UCU35
UCC90
UCA87
UCG8
AGU14
AGC42
Pro P5.8%
CCU44
CCC112
CCA61
CCG2
Thr T9.6%
ACU58
ACC153
ACA141
ACG11
Ala A6.3%
GCU39
GCC125
GCA69
GCG8
Tyr Y3.7%
UAU50
UAC89
His H2.4%
CAU21
CAC72
Gln Q2.4%
CAA86
CAG6
Asn N4.3%
AAU51
AAC114
Lys K2.4%
AAA87
AAG6
Asp D1.7%
GAU14
GAC51
Glu E2.3%
GAA72
GAG17
Cys C0.6%
UGU5
UGC17
Trp W2.7%
UGA91
UGG13
Arg R1.7%
CGU8
CGC25
CGA26
CGG4
Gly G5.5%
GGU32
GGC80
GGA74
GGG24
Stop 0.2%
UAA4
UAG2
AGA1
AGG1

Genome map

38 annotated features in NC_001644.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (43.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17171 bp+–
12S rRNARibosomal RNA721,021950 bp+44.8%
tRNA-ValTransfer RNA1,0221,09069 bp+–
16S rRNARibosomal RNA1,0912,6491,559 bp+42.3%
tRNA-Leu (UUR)Transfer RNA2,6502,72475 bp+–
ND1Protein-coding gene2,7273,681955 bp+44.8%
tRNA-IleTransfer RNA3,6833,75169 bp+–
tRNA-GlnTransfer RNA3,7493,82072 bp−–
tRNA-MetTransfer RNA3,8223,88968 bp+–
ND2Protein-coding gene3,8904,9331,044 bp+42.3%
tRNA-TrpTransfer RNA4,9324,99968 bp+–
tRNA-AlaTransfer RNA5,0075,07569 bp−–
tRNA-AsnTransfer RNA5,0775,14973 bp−–
tRNA-CysTransfer RNA5,1815,24666 bp−–
tRNA-TyrTransfer RNA5,2465,31166 bp−–
COX1Protein-coding gene5,3226,8631,542 bp+45.3%
tRNA-Ser (UCN)Transfer RNA6,8636,93472 bp−–
tRNA-AspTransfer RNA6,9367,00368 bp+–
COX2Protein-coding gene7,0047,687684 bp+44.6%
tRNA-LysTransfer RNA7,7147,78370 bp+–
ATP8Protein-coding gene7,7857,991207 bp+39.6%
ATP6Protein-coding gene7,9468,626681 bp+43.3%
COX3Protein-coding gene8,6269,409784 bp+44.6%
tRNA-GlyTransfer RNA9,4109,47768 bp+–
ND3Protein-coding gene9,4789,823346 bp+40.5%
tRNA-ArgTransfer RNA9,8249,88865 bp+–
ND4LProtein-coding gene9,88910,185297 bp+38.4%
ND4Protein-coding gene10,17911,5561,378 bp+44.4%
tRNA-HisTransfer RNA11,55711,62569 bp+–
tRNA-Ser (AGY)Transfer RNA11,62611,68459 bp+–
tRNA-Leu (CUN)Transfer RNA11,68511,75571 bp+–
ND5Protein-coding gene11,75613,5671,812 bp+43.1%
ND6Protein-coding gene13,56814,092525 bp−41.5%
tRNA-GluTransfer RNA14,09314,16169 bp−–
CYTBProtein-coding gene14,16615,3061,141 bp+46.3%
tRNA-ThrTransfer RNA15,30715,37266 bp+–
tRNA-ProTransfer RNA15,37515,44268 bp−–
D-loopControl region15,44316,5631,121 bp–46.7%

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