Paranotropis volucellus
Mimic shiner
GC content
44.85%
Whole genome
Non-coding
1,128 bp
D-loop 758 bp
Where Mimic shiner sits among 2,335 species
Whole-genome GC content against maximum lifespan. Mimic shiner has the 2,288th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,713 bp
- GC skew (G − C) / (G + C)
- −0.196
- AT skew (A − T) / (A + T)
- +0.021
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,713 bp
Protein-coding11,404 bp
12S rRNA956 bp
16S rRNA1,664 bp
All tRNA1,562 bp
D-loop758 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.39% | −0.221 | −0.115 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 47.08% | −0.301 | +0.005 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.88% | −0.149 | −0.104 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.11% | −0.216 | +0.055 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 38.18% | −0.492 | +0.157 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.01% | −0.296 | −0.071 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.12% | −0.171 | −0.064 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.70% | −0.218 | −0.088 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 44.44% | −0.288 | −0.067 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 43.92% | −0.305 | −0.045 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 44.83% | −0.276 | +0.001 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.23% | −0.346 | +0.343 | |||||
| CYTBCytochrome b | 1,141 bp | 45.40% | −0.263 | −0.050 | |||||
| 12S rRNA12S ribosomal RNA | 956 bp | 50.00% | −0.067 | +0.234 | |||||
| 16S rRNA16S ribosomal RNA | 1,664 bp | 45.37% | −0.028 | +0.232 | |||||
| D-loopControl region (D-loop) | 758 bp | 37.86% | −0.171 | −0.057 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU91
UUC135
Leu L16.5%
UUA111
UUG31
CUU132
CUC112
CUA183
CUG57
Ile I6.9%
AUU175
AUC87
Met M4.6%
AUA93
AUG83
Val V6.6%
GUU71
GUC48
GUA95
GUG37
Ser S6.4%
UCU47
UCC55
UCA69
UCG15
AGU10
AGC47
Pro P5.7%
CCU53
CCC55
CCA89
CCG18
Thr T7.8%
ACU70
ACC102
ACA103
ACG21
Ala A9.2%
GCU67
GCC137
GCA115
GCG32
Tyr Y3.0%
UAU52
UAC63
His H2.8%
CAU33
CAC72
Gln Q2.5%
CAA77
CAG20
Asn N2.9%
AAU53
AAC58
Lys K2.1%
AAA60
AAG19
Asp D2.0%
GAU31
GAC46
Glu E2.7%
GAA66
GAG35
Cys C0.7%
UGU12
UGC14
Trp W3.2%
UGA101
UGG19
Arg R2.0%
CGU13
CGC12
CGA41
CGG11
Gly G6.4%
GGU42
GGC58
GGA88
GGG56
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_080906.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,025 | 956 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,119 | 2,782 | 1,664 bp | + | 45.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,783 | 2,858 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,860 | 3,834 | 975 bp | + | 47.4% |
| tRNA-Ile | Transfer RNA | 3,839 | 3,910 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,909 | 3,979 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,981 | 4,049 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,050 | 5,094 | 1,045 bp | + | 47.1% |
| tRNA-Trp | Transfer RNA | 5,095 | 5,165 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,167 | 5,235 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,237 | 5,309 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,340 | 5,408 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,409 | 5,479 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,481 | 7,031 | 1,551 bp | + | 42.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,179 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 42.1% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,952 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,954 | 8,118 | 165 bp | + | 38.2% |
| ATP6 | Protein-coding gene | 8,112 | 8,795 | 684 bp | + | 44.0% |
| COX3 | Protein-coding gene | 8,795 | 9,579 | 785 bp | + | 46.1% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,650 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 9,999 | 349 bp | + | 44.7% |
| tRNA-Arg | Transfer RNA | 10,000 | 10,068 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 44.4% |
| ND4 | Protein-coding gene | 10,359 | 11,740 | 1,382 bp | + | 43.9% |
| tRNA-His | Transfer RNA | 11,741 | 11,809 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,810 | 11,878 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,880 | 11,952 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,953 | 13,788 | 1,836 bp | + | 44.8% |
| ND6 | Protein-coding gene | 13,785 | 14,306 | 522 bp | − | 49.2% |
| tRNA-Glu | Transfer RNA | 14,307 | 14,375 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,380 | 15,520 | 1,141 bp | + | 45.4% |
| tRNA-Thr | Transfer RNA | 15,521 | 15,591 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,591 | 15,660 | 70 bp | − | – |
| D-loop | Control region | 15,857 | 16,614 | 758 bp | – | 37.9% |