Parargyrops edita
Crimson sea bream
GC content
45.51%
Whole genome
Non-coding
1,028 bp
Including the D-loop
Where Crimson sea bream sits among 2,335 species
Whole-genome GC content against maximum lifespan. Crimson sea bream has the 1,852nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,640 bp
- GC skew (G − C) / (G + C)
- −0.266
- AT skew (A − T) / (A + T)
- +0.009
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,640 bp
Protein-coding11,420 bp
12S rRNA952 bp
16S rRNA1,696 bp
All tRNA1,554 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.33% | −0.344 | −0.062 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 48.33% | −0.474 | −0.061 | |||||
| COX1Cytochrome c oxidase subunit I | 1,563 bp | 45.49% | −0.173 | −0.131 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.99% | −0.257 | +0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.447 | +0.065 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.88% | −0.433 | −0.167 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.88% | −0.293 | −0.050 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.28% | −0.372 | −0.243 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.343 | −0.147 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.13% | −0.334 | −0.075 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.86% | −0.394 | +0.030 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.68% | −0.351 | +0.401 | |||||
| CYTBCytochrome b | 1,141 bp | 44.87% | −0.305 | −0.116 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 48.32% | −0.061 | +0.163 | |||||
| 16S rRNA16S ribosomal RNA | 1,696 bp | 45.81% | −0.073 | +0.221 |
Codon usage
Counts per codon, darker is more frequent3,812 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU115
UUC128
Leu L17.5%
UUA95
UUG18
CUU192
CUC162
CUA144
CUG57
Ile I7.0%
AUU158
AUC108
Met M4.1%
AUA92
AUG63
Val V5.8%
GUU85
GUC55
GUA66
GUG15
Ser S6.8%
UCU53
UCC66
UCA75
UCG10
AGU10
AGC45
Pro P5.7%
CCU54
CCC90
CCA65
CCG8
Thr T7.3%
ACU61
ACC115
ACA97
ACG6
Ala A9.2%
GCU52
GCC172
GCA114
GCG14
Tyr Y2.9%
UAU53
UAC59
His H2.8%
CAU28
CAC77
Gln Q2.6%
CAA77
CAG21
Asn N3.0%
AAU41
AAC72
Lys K2.0%
AAA67
AAG9
Asp D2.0%
GAU20
GAC56
Glu E2.6%
GAA79
GAG21
Cys C0.7%
UGU13
UGC14
Trp W3.1%
UGA104
UGG15
Arg R2.0%
CGU11
CGC16
CGA44
CGG5
Gly G6.3%
GGU45
GGC73
GGA82
GGG42
Stop 0.2%
UAA6
UAG1
AGA0
AGG1
Genome map
37 annotated features in NC_008616.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,020 | 952 bp | + | 48.3% |
| tRNA-Val | Transfer RNA | 1,021 | 1,092 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,788 | 1,696 bp | + | 45.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,789 | 2,861 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,862 | 3,836 | 975 bp | + | 45.3% |
| tRNA-Ile | Transfer RNA | 3,842 | 3,911 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,911 | 3,981 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,981 | 4,050 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,051 | 5,097 | 1,047 bp | + | 48.3% |
| tRNA-Trp | Transfer RNA | 5,097 | 5,166 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,167 | 5,235 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,237 | 5,309 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,346 | 5,411 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,412 | 5,481 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,483 | 7,045 | 1,563 bp | + | 45.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,037 | 7,107 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,110 | 7,182 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,191 | 7,881 | 691 bp | + | 44.0% |
| tRNA-Lys | Transfer RNA | 7,882 | 7,955 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,957 | 8,124 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,115 | 8,798 | 684 bp | + | 44.9% |
| COX3 | Protein-coding gene | 8,798 | 9,582 | 785 bp | + | 46.9% |
| tRNA-Gly | Transfer RNA | 9,583 | 9,654 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,655 | 10,003 | 349 bp | + | 49.3% |
| tRNA-Arg | Transfer RNA | 10,004 | 10,074 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,075 | 10,371 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,365 | 11,745 | 1,381 bp | + | 46.1% |
| tRNA-His | Transfer RNA | 11,746 | 11,814 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,815 | 11,882 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,889 | 11,961 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,962 | 13,800 | 1,839 bp | + | 44.9% |
| ND6 | Protein-coding gene | 13,797 | 14,318 | 522 bp | − | 43.7% |
| tRNA-Glu | Transfer RNA | 14,319 | 14,387 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,392 | 15,532 | 1,141 bp | + | 44.9% |
| tRNA-Thr | Transfer RNA | 15,533 | 15,606 | 74 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,607 | 15,676 | 70 bp | − | – |