Parupeneus heptacantha
Cinnabar goatfish
GC content
49.83%
Whole genome
Non-coding
1,156 bp
D-loop 912 bp
Where Cinnabar goatfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Cinnabar goatfish has the 1,949th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,749 bp
- GC skew (G − C) / (G + C)
- −0.263
- AT skew (A − T) / (A + T)
- +0.039
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,749 bp
Protein-coding11,416 bp
12S rRNA954 bp
16S rRNA1,668 bp
All tRNA1,555 bp
D-loop912 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 52.62% | −0.333 | −0.091 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 52.29% | −0.382 | −0.014 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 49.58% | −0.220 | −0.045 | |||||
| COX2Cytochrome c oxidase subunit II | 693 bp | 48.77% | −0.266 | +0.048 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 54.76% | −0.478 | +0.079 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 51.32% | −0.379 | −0.045 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 52.36% | −0.309 | −0.027 | |||||
| ND3NADH dehydrogenase subunit 3 | 350 bp | 53.14% | −0.280 | −0.220 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.84% | −0.311 | −0.123 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 51.34% | −0.346 | +0.009 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 51.06% | −0.382 | +0.042 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 53.26% | −0.317 | +0.418 | |||||
| CYTBCytochrome b | 1,141 bp | 49.96% | −0.351 | −0.065 | |||||
| 12S rRNA12S ribosomal RNA | 954 bp | 53.56% | −0.088 | +0.187 | |||||
| 16S rRNA16S ribosomal RNA | 1,668 bp | 46.70% | −0.073 | +0.235 | |||||
| D-loopControl region (D-loop) | 912 bp | 38.60% | −0.182 | −0.004 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU66
UUC166
Leu L16.9%
UUA32
UUG11
CUU116
CUC217
CUA184
CUG84
Ile I6.9%
AUU118
AUC143
Met M3.9%
AUA29
AUG119
Val V6.4%
GUU54
GUC89
GUA66
GUG33
Ser S6.4%
UCU33
UCC81
UCA66
UCG14
AGU5
AGC46
Pro P5.7%
CCU39
CCC104
CCA57
CCG17
Thr T8.0%
ACU45
ACC131
ACA111
ACG19
Ala A9.5%
GCU44
GCC183
GCA101
GCG34
Tyr Y2.9%
UAU24
UAC86
His H2.7%
CAU11
CAC93
Gln Q2.4%
CAA63
CAG27
Asn N3.0%
AAU30
AAC83
Lys K2.0%
AAA57
AAG19
Asp D2.1%
GAU19
GAC60
Glu E2.6%
GAA69
GAG31
Cys C0.8%
UGU4
UGC26
Trp W3.1%
UGA97
UGG21
Arg R2.1%
CGU12
CGC16
CGA45
CGG7
Gly G6.4%
GGU21
GGC113
GGA53
GGG58
Stop 0.2%
UAA5
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_062603.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (49.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,023 | 954 bp | + | 53.6% |
| tRNA-Val | Transfer RNA | 1,025 | 1,096 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,120 | 2,787 | 1,668 bp | + | 46.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,788 | 2,861 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,862 | 3,836 | 975 bp | + | 52.6% |
| tRNA-Ile | Transfer RNA | 3,841 | 3,911 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,913 | 3,983 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,983 | 4,053 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,055 | 5,100 | 1,046 bp | + | 52.3% |
| tRNA-Trp | Transfer RNA | 5,101 | 5,171 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,172 | 5,240 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,242 | 5,314 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,347 | 5,413 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,414 | 5,483 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,485 | 7,041 | 1,557 bp | + | 49.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,062 | 7,132 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,135 | 7,207 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,215 | 7,907 | 693 bp | + | 48.8% |
| tRNA-Lys | Transfer RNA | 8,077 | 8,150 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,152 | 8,319 | 168 bp | + | 54.8% |
| ATP6 | Protein-coding gene | 8,310 | 8,993 | 684 bp | + | 51.3% |
| COX3 | Protein-coding gene | 8,993 | 9,777 | 785 bp | + | 52.4% |
| tRNA-Gly | Transfer RNA | 9,778 | 9,847 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,848 | 10,197 | 350 bp | + | 53.1% |
| tRNA-Arg | Transfer RNA | 10,198 | 10,266 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,268 | 10,564 | 297 bp | + | 50.8% |
| ND4 | Protein-coding gene | 10,558 | 11,938 | 1,381 bp | + | 51.3% |
| tRNA-His | Transfer RNA | 11,939 | 12,008 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 12,009 | 12,076 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,080 | 12,152 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,153 | 13,991 | 1,839 bp | + | 51.1% |
| ND6 | Protein-coding gene | 13,988 | 14,509 | 522 bp | − | 53.3% |
| tRNA-Glu | Transfer RNA | 14,510 | 14,578 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,584 | 15,724 | 1,141 bp | + | 50.0% |
| tRNA-Thr | Transfer RNA | 15,725 | 15,796 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,796 | 15,865 | 70 bp | − | – |
| D-loop | Control region | 15,796 | 16,707 | 912 bp | – | 38.6% |