Penaeus duorarum
Pink shrimp
GC content
32.77%
Whole genome
Non-coding
1,104 bp
D-loop 982 bp
Where Pink shrimp sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pink shrimp has the 2,264th longest lifespan of them.
- This species
- All other species
Base composition
Whole genome15,971 bp
- GC skew (G − C) / (G + C)
- −0.166
- AT skew (A − T) / (A + T)
- −0.036
About this record
- Lifespan source
- SeaLifeBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome15,971 bp
Protein-coding11,153 bp
12S rRNA857 bp
16S rRNA1,377 bp
All tRNA1,490 bp
D-loop982 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 939 bp | 32.91% | −0.159 | +0.171 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,002 bp | 34.63% | −0.251 | −0.200 | |||||
| COX1Cytochrome c oxidase subunit I | 1,534 bp | 37.03% | −0.046 | −0.147 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 35.32% | −0.054 | −0.070 | |||||
| ATP8ATP synthase F0 subunit 8 | 159 bp | 25.16% | −0.350 | +0.042 | |||||
| ATP6ATP synthase F0 subunit 6 | 675 bp | 34.07% | −0.174 | −0.164 | |||||
| COX3Cytochrome c oxidase subunit III | 790 bp | 39.62% | −0.125 | −0.140 | |||||
| ND3NADH dehydrogenase subunit 3 | 352 bp | 33.24% | −0.077 | −0.191 | |||||
| ND4LNADH dehydrogenase subunit 4L | 300 bp | 29.67% | −0.281 | +0.194 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,341 bp | 31.39% | −0.183 | +0.137 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,734 bp | 32.58% | −0.189 | +0.162 | |||||
| ND6NADH dehydrogenase subunit 6 | 516 bp | 30.04% | −0.432 | −0.280 | |||||
| CYTBCytochrome b | 1,137 bp | 36.24% | −0.214 | −0.208 | |||||
| 12S rRNA12S ribosomal RNA | 857 bp | 32.79% | −0.238 | −0.052 | |||||
| 16S rRNA16S ribosomal RNA | 1,377 bp | 28.76% | −0.247 | −0.060 | |||||
| D-loopControl region (D-loop) | 982 bp | 21.39% | −0.057 | −0.047 |
Codon usage
Counts per codon, darker is more frequent3,721 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F7.7%
UUU183
UUC104
Leu L15.6%
UUA272
UUG49
CUU115
CUC29
CUA85
CUG29
Ile I8.0%
AUU219
AUC80
Met M5.3%
AUA157
AUG41
Val V7.3%
GUU98
GUC11
GUA136
GUG28
Ser S9.3%
UCU106
UCC32
UCA73
UCG10
AGU36
AGC13
AGA77
AGG0
Pro P4.0%
CCU79
CCC19
CCA41
CCG10
Thr T5.5%
ACU99
ACC25
ACA63
ACG17
Ala A6.8%
GCU139
GCC44
GCA58
GCG13
Tyr Y4.0%
UAU111
UAC36
His H2.4%
CAU57
CAC31
Gln Q2.0%
CAA50
CAG23
Asn N3.7%
AAU88
AAC49
Lys K2.1%
AAA59
AAG21
Asp D2.0%
GAU54
GAC19
Glu E2.1%
GAA51
GAG28
Cys C1.1%
UGU32
UGC8
Trp W2.7%
UGA85
UGG17
Arg R1.6%
CGU19
CGC2
CGA31
CGG9
Gly G6.5%
GGU77
GGC8
GGA103
GGG54
Stop 0.2%
UAA8
UAG1
Genome map
38 annotated features in NC_068255.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (32.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Ile | Transfer RNA | 1 | 67 | 67 bp | + | – |
| tRNA-Gln | Transfer RNA | 84 | 153 | 70 bp | − | – |
| tRNA-Met | Transfer RNA | 187 | 255 | 69 bp | + | – |
| ND2 | Protein-coding gene | 256 | 1,257 | 1,002 bp | + | 34.6% |
| tRNA-Trp | Transfer RNA | 1,256 | 1,323 | 68 bp | + | – |
| tRNA-Cys | Transfer RNA | 1,323 | 1,388 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 1,390 | 1,455 | 66 bp | − | – |
| COX1 | Protein-coding gene | 1,458 | 2,991 | 1,534 bp | + | 37.0% |
| tRNA-Leu | Transfer RNA | 2,992 | 3,057 | 66 bp | + | – |
| COX2 | Protein-coding gene | 3,064 | 3,751 | 688 bp | + | 35.3% |
| tRNA-Lys | Transfer RNA | 3,752 | 3,820 | 69 bp | + | – |
| tRNA-Asp | Transfer RNA | 3,824 | 3,893 | 70 bp | + | – |
| ATP8 | Protein-coding gene | 3,894 | 4,052 | 159 bp | + | 25.2% |
| ATP6 | Protein-coding gene | 4,046 | 4,720 | 675 bp | + | 34.1% |
| COX3 | Protein-coding gene | 4,729 | 5,518 | 790 bp | + | 39.6% |
| tRNA-Gly | Transfer RNA | 5,519 | 5,584 | 66 bp | + | – |
| ND3 | Protein-coding gene | 5,585 | 5,936 | 352 bp | + | 33.2% |
| tRNA-Ala | Transfer RNA | 5,937 | 6,001 | 65 bp | + | – |
| tRNA-Arg | Transfer RNA | 6,004 | 6,068 | 65 bp | + | – |
| tRNA-Asn | Transfer RNA | 6,071 | 6,139 | 69 bp | + | – |
| tRNA-Ser | Transfer RNA | 6,140 | 6,206 | 67 bp | + | – |
| tRNA-Glu | Transfer RNA | 6,207 | 6,276 | 70 bp | + | – |
| tRNA-Phe | Transfer RNA | 6,296 | 6,363 | 68 bp | − | – |
| ND5 | Protein-coding gene | 6,363 | 8,096 | 1,734 bp | − | 32.6% |
| tRNA-His | Transfer RNA | 8,097 | 8,163 | 67 bp | − | – |
| ND4 | Protein-coding gene | 8,164 | 9,504 | 1,341 bp | − | 31.4% |
| ND4L | Protein-coding gene | 9,498 | 9,797 | 300 bp | − | 29.7% |
| tRNA-Thr | Transfer RNA | 9,800 | 9,867 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 9,868 | 9,933 | 66 bp | − | – |
| ND6 | Protein-coding gene | 9,935 | 10,450 | 516 bp | + | 30.0% |
| CYTB | Protein-coding gene | 10,454 | 11,590 | 1,137 bp | + | 36.2% |
| tRNA-Ser | Transfer RNA | 11,590 | 11,659 | 70 bp | + | – |
| ND1 | Protein-coding gene | 11,679 | 12,617 | 939 bp | − | 32.9% |
| tRNA-Leu | Transfer RNA | 12,623 | 12,689 | 67 bp | − | – |
| 16S rRNA | Ribosomal RNA | 12,690 | 14,066 | 1,377 bp | − | 28.8% |
| tRNA-Val | Transfer RNA | 14,062 | 14,133 | 72 bp | − | – |
| 12S rRNA | Ribosomal RNA | 14,133 | 14,989 | 857 bp | − | 32.8% |
| D-loop | Control region | 14,990 | 15,971 | 982 bp | – | 21.4% |