Perca flavescens

Yellow perch

Maximum lifespan

12 yr

AnAge record

mtDNA size

16,537 bp

RefSeq NC_019572.1

GC content

44.62%

Whole genome

Non-coding

938 bp

Including the D-loop

Where Yellow perch sits among 2,335 species

Whole-genome GC content against maximum lifespan. Yellow perch has the 1,409th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,537 bp

GC skew (G − C) / (G + C): −0.252
AT skew (A − T) / (A + T): −0.006

Life history

Maximum lifespan: 12 years
Adult weight: 1.1 kg
Gestation or incubation: 16 days
Litter or clutch size: 100,000

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04298)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,537 bp

Protein-coding11,416 bp

12S rRNA947 bp

16S rRNA1,695 bp

All tRNA1,549 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Perca flavescens genes

ND1NADH dehydrogenase subunit 1	975 bp	22.8%	31.1%	16.5%	29.6%	46.15%	−0.284	−0.154
ND2NADH dehydrogenase subunit 2	1,046 bp	26.9%	28.7%	12.5%	31.9%	44.46%	−0.437	−0.033
COX1Cytochrome c oxidase subunit I	1,560 bp	23.8%	32.5%	17.8%	25.8%	43.65%	−0.184	−0.154
COX2Cytochrome c oxidase subunit II	691 bp	28.9%	28.5%	16.2%	26.3%	42.55%	−0.238	+0.008
ATP8ATP synthase F0 subunit 8	168 bp	32.7%	25.0%	10.7%	31.5%	42.26%	−0.493	+0.134
ATP6ATP synthase F0 subunit 6	684 bp	23.4%	31.6%	12.9%	32.2%	45.03%	−0.429	−0.149
COX3Cytochrome c oxidase subunit III	785 bp	23.9%	28.8%	17.3%	29.9%	47.26%	−0.267	−0.092
ND3NADH dehydrogenase subunit 3	349 bp	20.1%	34.4%	16.3%	29.2%	45.56%	−0.283	−0.263
ND4LNADH dehydrogenase subunit 4L	297 bp	23.6%	28.6%	14.8%	33.0%	47.81%	−0.380	−0.097
ND4NADH dehydrogenase subunit 4	1,381 bp	26.5%	28.2%	15.5%	29.8%	45.33%	−0.316	−0.030
ND5NADH dehydrogenase subunit 5	1,839 bp	27.3%	30.1%	13.8%	28.8%	42.58%	−0.351	−0.049
ND6NADH dehydrogenase subunit 6	522 bp	37.4%	19.0%	13.2%	30.5%	43.68%	−0.395	+0.327
CYTBCytochrome b	1,141 bp	24.2%	30.7%	15.5%	29.6%	45.14%	−0.313	−0.118
12S rRNA12S ribosomal RNA	947 bp	31.2%	20.8%	22.1%	26.0%	48.05%	−0.081	+0.199
16S rRNA16S ribosomal RNA	1,695 bp	32.4%	21.6%	20.7%	25.3%	45.96%	−0.099	+0.201

Codon usage

Counts per codon, darker is more frequent

Gene

3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU129

UUC105

Leu L17.5%

UUA122

UUG15

CUU200

CUC124

CUA154

CUG53

Ile I6.9%

AUU173

AUC91

Met M3.9%

AUA103

AUG47

Val V6.0%

GUU75

GUC59

GUA75

GUG21

Ser S6.2%

UCU50

UCC60

UCA58

UCG12

AGU19

AGC36

Pro P5.8%

CCU92

CCC83

CCA38

CCG9

Thr T7.7%

ACU60

ACC118

ACA105

ACG12

Ala A9.3%

GCU87

GCC147

GCA110

GCG11

Tyr Y2.9%

UAU54

UAC58

His H2.8%

CAU35

CAC71

Gln Q2.6%

CAA80

CAG19

Asn N3.0%

AAU43

AAC72

Lys K1.9%

AAA67

AAG7

Asp D2.1%

GAU34

GAC45

Glu E2.6%

GAA75

GAG25

Cys C0.6%

UGU8

UGC15

Trp W3.1%

UGA99

UGG21

Arg R2.0%

CGU14

CGC15

CGA44

CGG5

Gly G6.4%

GGU46

GGC77

GGA78

GGG43

Stop 0.2%

UAA6

UAG1

AGA0

AGG0

Genome map

37 annotated features in NC_019572.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (44.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 37 features as a table

Annotated features of Perca flavescens (NC_019572.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,015	947 bp	+	48.1%
tRNA-Val	Transfer RNA	1,016	1,087	72 bp	+	–
16S rRNA	Ribosomal RNA	1,089	2,783	1,695 bp	+	46.0%
tRNA-Leu (UUR)	Transfer RNA	2,784	2,857	74 bp	+	–
ND1	Protein-coding gene	2,858	3,832	975 bp	+	46.2%
tRNA-Ile	Transfer RNA	3,837	3,906	70 bp	+	–
tRNA-Gln	Transfer RNA	3,906	3,976	71 bp	−	–
tRNA-Met	Transfer RNA	3,976	4,044	69 bp	+	–
ND2	Protein-coding gene	4,045	5,090	1,046 bp	+	44.5%
tRNA-Trp	Transfer RNA	5,091	5,161	71 bp	+	–
tRNA-Ala	Transfer RNA	5,163	5,231	69 bp	−	–
tRNA-Asn	Transfer RNA	5,233	5,305	73 bp	−	–
tRNA-Cys	Transfer RNA	5,343	5,408	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,409	5,479	71 bp	−	–
COX1	Protein-coding gene	5,472	7,031	1,560 bp	+	43.7%
tRNA-Ser (UCN)	Transfer RNA	7,032	7,102	71 bp	−	–
tRNA-Asp	Transfer RNA	7,106	7,177	72 bp	+	–
COX2	Protein-coding gene	7,186	7,876	691 bp	+	42.6%
tRNA-Lys	Transfer RNA	7,877	7,950	74 bp	+	–
ATP8	Protein-coding gene	7,952	8,119	168 bp	+	42.3%
ATP6	Protein-coding gene	8,110	8,793	684 bp	+	45.0%
COX3	Protein-coding gene	8,793	9,577	785 bp	+	47.3%
tRNA-Gly	Transfer RNA	9,578	9,648	71 bp	+	–
ND3	Protein-coding gene	9,649	9,997	349 bp	+	45.6%
tRNA-Arg	Transfer RNA	9,998	10,066	69 bp	+	–
ND4L	Protein-coding gene	10,067	10,363	297 bp	+	47.8%
ND4	Protein-coding gene	10,357	11,737	1,381 bp	+	45.3%
tRNA-His	Transfer RNA	11,738	11,806	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,807	11,874	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,881	11,953	73 bp	+	–
ND5	Protein-coding gene	11,954	13,792	1,839 bp	+	42.6%
ND6	Protein-coding gene	13,789	14,310	522 bp	−	43.7%
tRNA-Glu	Transfer RNA	14,311	14,379	69 bp	−	–
CYTB	Protein-coding gene	14,385	15,525	1,141 bp	+	45.1%
tRNA-Thr	Transfer RNA	15,526	15,597	72 bp	+	–
tRNA-Pro	Transfer RNA	15,597	15,666	70 bp	−	–