Percalates colonorum
Estuary perch
GC content
45.01%
Whole genome
Non-coding
904 bp
D-loop 846 bp
Where Estuary perch sits among 2,335 species
Whole-genome GC content against maximum lifespan. Estuary perch has the 263rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,506 bp
- GC skew (G − C) / (G + C)
- −0.276
- AT skew (A − T) / (A + T)
- +0.015
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,506 bp
Protein-coding11,407 bp
12S rRNA949 bp
16S rRNA1,694 bp
All tRNA1,552 bp
D-loop846 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.67% | −0.341 | −0.096 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 46.08% | −0.465 | −0.050 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.49% | −0.186 | −0.145 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.42% | −0.247 | −0.028 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 46.43% | −0.487 | +0.067 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.86% | −0.420 | −0.125 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.37% | −0.269 | −0.093 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.42% | −0.373 | −0.133 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 52.19% | −0.368 | −0.113 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.09% | −0.324 | −0.020 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.32% | −0.418 | +0.025 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.25% | −0.515 | +0.457 | |||||
| CYTBCytochrome b | 1,141 bp | 46.36% | −0.338 | −0.118 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 46.79% | −0.099 | +0.184 | |||||
| 16S rRNA16S ribosomal RNA | 1,694 bp | 44.92% | −0.112 | +0.211 | |||||
| D-loopControl region (D-loop) | 846 bp | 37.71% | −0.141 | +0.017 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU122
UUC119
Leu L17.3%
UUA100
UUG28
CUU171
CUC150
CUA170
CUG39
Ile I7.4%
AUU176
AUC105
Met M4.0%
AUA96
AUG57
Val V5.7%
GUU70
GUC56
GUA63
GUG28
Ser S6.6%
UCU58
UCC69
UCA56
UCG5
AGU23
AGC39
Pro P5.8%
CCU62
CCC96
CCA52
CCG9
Thr T7.5%
ACU60
ACC126
ACA95
ACG6
Ala A9.1%
GCU71
GCC155
GCA109
GCG12
Tyr Y2.9%
UAU50
UAC62
His H2.8%
CAU31
CAC76
Gln Q2.6%
CAA88
CAG12
Asn N3.1%
AAU47
AAC72
Lys K1.9%
AAA67
AAG7
Asp D2.0%
GAU32
GAC46
Glu E2.5%
GAA76
GAG21
Cys C0.6%
UGU7
UGC17
Trp W3.2%
UGA96
UGG25
Arg R2.0%
CGU11
CGC13
CGA43
CGG9
Gly G6.3%
GGU30
GGC86
GGA78
GGG45
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_087904.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,017 | 949 bp | + | 46.8% |
| tRNA-Val | Transfer RNA | 1,018 | 1,089 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,090 | 2,783 | 1,694 bp | + | 44.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,857 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,858 | 3,832 | 975 bp | + | 46.7% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,906 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,906 | 3,976 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,976 | 4,044 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,090 | 1,046 bp | + | 46.1% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,161 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,163 | 5,231 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,233 | 5,305 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,342 | 5,407 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,408 | 5,477 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,479 | 7,029 | 1,551 bp | + | 44.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,030 | 7,100 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,104 | 7,176 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,184 | 7,874 | 691 bp | + | 43.4% |
| tRNA-Lys | Transfer RNA | 7,875 | 7,948 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,950 | 8,117 | 168 bp | + | 46.4% |
| ATP6 | Protein-coding gene | 8,108 | 8,791 | 684 bp | + | 43.9% |
| COX3 | Protein-coding gene | 8,791 | 9,575 | 785 bp | + | 46.4% |
| tRNA-Gly | Transfer RNA | 9,576 | 9,646 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,647 | 9,995 | 349 bp | + | 48.4% |
| tRNA-Arg | Transfer RNA | 9,996 | 10,064 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,065 | 10,361 | 297 bp | + | 52.2% |
| ND4 | Protein-coding gene | 10,355 | 11,735 | 1,381 bp | + | 43.1% |
| tRNA-His | Transfer RNA | 11,736 | 11,804 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,805 | 11,872 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,873 | 11,949 | 77 bp | + | – |
| ND5 | Protein-coding gene | 11,950 | 13,788 | 1,839 bp | + | 44.3% |
| ND6 | Protein-coding gene | 13,785 | 14,306 | 522 bp | − | 44.3% |
| tRNA-Glu | Transfer RNA | 14,307 | 14,374 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,379 | 15,519 | 1,141 bp | + | 46.4% |
| tRNA-Thr | Transfer RNA | 15,520 | 15,591 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,591 | 15,660 | 70 bp | − | – |
| D-loop | Control region | 15,661 | 16,506 | 846 bp | – | 37.7% |