Percina evides
Gilt darter
GC content
46.52%
Whole genome
Non-coding
982 bp
D-loop 915 bp
Where Gilt darter sits among 2,335 species
Whole-genome GC content against maximum lifespan. Gilt darter has the 2,093rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,572 bp
- GC skew (G − C) / (G + C)
- −0.240
- AT skew (A − T) / (A + T)
- −0.007
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,572 bp
Protein-coding11,406 bp
12S rRNA945 bp
16S rRNA1,689 bp
All tRNA1,550 bp
D-loop915 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.10% | −0.296 | −0.166 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.09% | −0.404 | −0.017 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.45% | −0.193 | −0.109 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.26% | −0.247 | −0.023 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.447 | +0.087 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.18% | −0.392 | −0.136 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 49.11% | −0.283 | −0.073 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.99% | −0.378 | −0.265 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.85% | −0.286 | −0.231 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.34% | −0.281 | −0.074 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.90% | −0.313 | −0.015 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.13% | −0.350 | +0.348 | |||||
| CYTBCytochrome b | 1,141 bp | 49.52% | −0.320 | −0.122 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 48.57% | −0.089 | +0.193 | |||||
| 16S rRNA16S ribosomal RNA | 1,689 bp | 46.42% | −0.082 | +0.176 | |||||
| D-loopControl region (D-loop) | 915 bp | 37.27% | −0.062 | −0.049 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU122
UUC109
Leu L17.5%
UUA91
UUG26
CUU179
CUC157
CUA153
CUG60
Ile I7.1%
AUU172
AUC97
Met M3.9%
AUA82
AUG66
Val V5.8%
GUU73
GUC49
GUA67
GUG30
Ser S6.2%
UCU42
UCC74
UCA57
UCG9
AGU14
AGC40
Pro P5.9%
CCU68
CCC112
CCA32
CCG13
Thr T7.6%
ACU52
ACC112
ACA100
ACG24
Ala A9.6%
GCU58
GCC181
GCA105
GCG20
Tyr Y2.9%
UAU51
UAC60
His H2.9%
CAU39
CAC70
Gln Q2.6%
CAA77
CAG22
Asn N3.0%
AAU41
AAC72
Lys K2.0%
AAA58
AAG18
Asp D2.0%
GAU22
GAC56
Glu E2.6%
GAA67
GAG33
Cys C0.6%
UGU8
UGC15
Trp W3.2%
UGA96
UGG24
Arg R2.0%
CGU16
CGC13
CGA28
CGG19
Gly G6.5%
GGU26
GGC90
GGA70
GGG63
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_056399.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 48.6% |
| tRNA-Val | Transfer RNA | 1,014 | 1,086 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,775 | 1,689 bp | + | 46.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,776 | 2,849 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,850 | 3,824 | 975 bp | + | 48.1% |
| tRNA-Ile | Transfer RNA | 3,829 | 3,898 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,898 | 3,968 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,968 | 4,036 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,037 | 5,082 | 1,046 bp | + | 48.1% |
| tRNA-Trp | Transfer RNA | 5,083 | 5,153 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,155 | 5,223 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,225 | 5,297 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,336 | 5,401 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,402 | 5,472 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,474 | 7,024 | 1,551 bp | + | 47.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,025 | 7,095 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,099 | 7,170 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,178 | 7,868 | 691 bp | + | 42.3% |
| tRNA-Lys | Transfer RNA | 7,869 | 7,942 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,944 | 8,111 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,102 | 8,785 | 684 bp | + | 45.2% |
| COX3 | Protein-coding gene | 8,785 | 9,568 | 784 bp | + | 49.1% |
| tRNA-Gly | Transfer RNA | 9,570 | 9,640 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,641 | 9,989 | 349 bp | + | 47.0% |
| tRNA-Arg | Transfer RNA | 9,990 | 10,058 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,059 | 10,355 | 297 bp | + | 51.9% |
| ND4 | Protein-coding gene | 10,349 | 11,729 | 1,381 bp | + | 46.3% |
| tRNA-His | Transfer RNA | 11,730 | 11,798 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,799 | 11,866 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,872 | 11,944 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,945 | 13,783 | 1,839 bp | + | 45.9% |
| ND6 | Protein-coding gene | 13,780 | 14,301 | 522 bp | − | 47.1% |
| tRNA-Glu | Transfer RNA | 14,302 | 14,370 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,376 | 15,516 | 1,141 bp | + | 49.5% |
| tRNA-Thr | Transfer RNA | 15,517 | 15,588 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,588 | 15,657 | 70 bp | − | – |
| D-loop | Control region | 15,658 | 16,572 | 915 bp | – | 37.3% |