MitoAge

Peromyscus eremicus

Cactus mouse

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Maximum lifespan
7.4 yr
AnAge record
mtDNA size
15,988 bp
RefSeq NC_047188.1
GC content
37.42%
Whole genome
Non-coding
685 bp
D-loop 562 bp

Where Cactus mouse sits among 2,335 species

Whole-genome GC content against maximum lifespan. Cactus mouse has the 1,800th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Cactus mouse
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome15,988 bp
GC skew (G − C) / (G + C)
−0.326
AT skew (A − T) / (A + T)
+0.115

Life history

Maximum lifespan
7.4 years
Adult weight
25 g
Birth weight
2.3 g
Basal metabolic rate
0.173 W
Body temperature
36.6 °C
Female sexual maturity
129 days
Gestation or incubation
26 days
Litter or clutch size
2.6
Litters per year
3.5

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02914)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome15,988 bp
Protein-coding11,348 bp
12S rRNA954 bp
16S rRNA1,509 bp
All tRNA1,498 bp
D-loop562 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp34.1%28.6%11.3%26.0%37.30%−0.395+0.087
ND2NADH dehydrogenase subunit 21,038 bp40.0%25.2%7.2%27.6%34.78%−0.584+0.226
COX1Cytochrome c oxidase subunit I1,545 bp30.3%30.2%15.5%23.9%39.48%−0.213+0.001
COX2Cytochrome c oxidase subunit II684 bp34.5%27.3%13.0%25.1%38.16%−0.318+0.116
ATP8ATP synthase F0 subunit 8204 bp38.7%27.9%5.9%27.5%33.33%−0.647+0.162
ATP6ATP synthase F0 subunit 6681 bp31.7%28.8%10.0%29.5%39.50%−0.494+0.049
COX3Cytochrome c oxidase subunit III784 bp30.5%27.6%14.8%27.2%41.96%−0.295+0.051
ND3NADH dehydrogenase subunit 3348 bp33.3%31.9%11.5%23.3%34.77%−0.339+0.022
ND4LNADH dehydrogenase subunit 4L297 bp32.3%29.6%9.4%28.6%38.05%−0.504+0.043
ND4NADH dehydrogenase subunit 41,378 bp35.5%28.7%9.7%26.1%35.78%−0.460+0.105
ND5NADH dehydrogenase subunit 51,815 bp35.2%27.8%9.5%27.4%36.97%−0.484+0.117
ND6NADH dehydrogenase subunit 6528 bp40.7%22.3%8.1%28.8%36.93%−0.559+0.291
CYTBCytochrome b1,144 bp31.9%27.5%12.5%28.1%40.56%−0.384+0.074
12S rRNA12S ribosomal RNA954 bp37.4%24.4%18.0%20.1%38.16%−0.055+0.210
16S rRNA16S ribosomal RNA1,509 bp38.2%24.7%17.3%19.7%37.04%−0.066+0.215
D-loopControl region (D-loop)562 bp31.3%31.5%14.4%22.8%37.19%−0.225−0.003

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%
UUU88
UUC143
Leu L15.4%
UUA128
UUG13
CUU69
CUC59
CUA294
CUG22
Ile I9.6%
AUU175
AUC188
Met M6.7%
AUA218
AUG35
Val V4.4%
GUU25
GUC28
GUA105
GUG11
Ser S7.8%
UCU48
UCC66
UCA128
UCG2
AGU13
AGC40
Pro P5.3%
CCU34
CCC29
CCA134
CCG3
Thr T8.3%
ACU59
ACC79
ACA174
ACG2
Ala A6.1%
GCU50
GCC87
GCA92
GCG1
Tyr Y3.3%
UAU56
UAC71
His H2.4%
CAU37
CAC56
Gln Q2.1%
CAA79
CAG0
Asn N4.6%
AAU68
AAC105
Lys K2.7%
AAA98
AAG4
Asp D1.9%
GAU27
GAC45
Glu E2.4%
GAA81
GAG12
Cys C0.8%
UGU10
UGC21
Trp W2.7%
UGA96
UGG7
Arg R1.7%
CGU7
CGC15
CGA41
CGG2
Gly G5.5%
GGU32
GGC34
GGA119
GGG25
Stop 0.3%
UAA8
UAG2
AGA0
AGG0

Genome map

38 annotated features in NC_047188.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (37.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16767 bp+–
12S rRNARibosomal RNA701,023954 bp+38.2%
tRNA-ValTransfer RNA1,0241,09471 bp+–
16S rRNARibosomal RNA1,1402,6481,509 bp+37.0%
tRNA-Leu (UUR)Transfer RNA2,6652,74076 bp+–
ND1Protein-coding gene2,7413,697957 bp+37.3%
tRNA-IleTransfer RNA3,6953,76571 bp+–
tRNA-GlnTransfer RNA3,7623,83271 bp−–
tRNA-MetTransfer RNA3,8383,90669 bp+–
ND2Protein-coding gene3,9074,9441,038 bp+34.8%
tRNA-TrpTransfer RNA4,9465,01065 bp+–
tRNA-AlaTransfer RNA5,0135,08169 bp−–
tRNA-AsnTransfer RNA5,0845,15370 bp−–
tRNA-CysTransfer RNA5,1855,25167 bp−–
tRNA-TyrTransfer RNA5,2525,31867 bp−–
COX1Protein-coding gene5,3206,8641,545 bp+39.5%
tRNA-Ser (UCN)Transfer RNA6,8626,93069 bp−–
tRNA-AspTransfer RNA6,9347,00168 bp+–
COX2Protein-coding gene7,0037,686684 bp+38.2%
tRNA-LysTransfer RNA7,6907,75364 bp+–
ATP8Protein-coding gene7,7567,959204 bp+33.3%
ATP6Protein-coding gene7,9178,597681 bp+39.5%
COX3Protein-coding gene8,5979,380784 bp+42.0%
tRNA-GlyTransfer RNA9,3819,44969 bp+–
ND3Protein-coding gene9,4509,797348 bp+34.8%
tRNA-ArgTransfer RNA9,8009,86768 bp+–
ND4LProtein-coding gene9,87010,166297 bp+38.1%
ND4Protein-coding gene10,16011,5371,378 bp+35.8%
tRNA-HisTransfer RNA11,53811,60568 bp+–
tRNA-Ser (AGY)Transfer RNA11,60611,66459 bp+–
tRNA-Leu (CUN)Transfer RNA11,66511,73470 bp+–
ND5Protein-coding gene11,73513,5491,815 bp+37.0%
ND6Protein-coding gene13,54614,073528 bp−36.9%
tRNA-GluTransfer RNA14,07414,14269 bp−–
CYTBProtein-coding gene14,14815,2911,144 bp+40.6%
tRNA-ThrTransfer RNA15,29215,35968 bp+–
tRNA-ProTransfer RNA15,36015,42667 bp−–
D-loopControl region15,42715,988562 bp–37.2%

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