MitoAge

Peromyscus maniculatus

Deer mouse

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Maximum lifespan
8.3 yr
AnAge record
mtDNA size
16,322 bp
RefSeq NC_039921.1
GC content
36.87%
Whole genome
Non-coding
994 bp
D-loop 897 bp

Where Deer mouse sits among 2,335 species

Whole-genome GC content against maximum lifespan. Deer mouse has the 1,713th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Deer mouse
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,322 bp
GC skew (G − C) / (G + C)
−0.306
AT skew (A − T) / (A + T)
+0.101

Life history

Maximum lifespan
8.3 years
Adult weight
20.5 g
Birth weight
2 g
Basal metabolic rate
0.219 W
Body temperature
36.6 °C
Female sexual maturity
49 days
Gestation or incubation
24 days
Litter or clutch size
5
Litters per year
3
Postnatal growth rate
0.0643 per day

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02917)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,322 bp
Protein-coding11,345 bp
12S rRNA954 bp
16S rRNA1,532 bp
All tRNA1,502 bp
D-loop897 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp34.1%27.9%11.8%26.2%38.01%−0.377+0.101
ND2NADH dehydrogenase subunit 21,037 bp39.5%25.7%7.0%27.8%34.81%−0.596+0.213
COX1Cytochrome c oxidase subunit I1,545 bp29.6%30.9%16.4%23.1%39.48%−0.170−0.020
COX2Cytochrome c oxidase subunit II684 bp35.1%27.3%13.5%24.1%37.57%−0.284+0.124
ATP8ATP synthase F0 subunit 8204 bp38.2%27.5%7.4%27.0%34.31%−0.571+0.164
ATP6ATP synthase F0 subunit 6681 bp32.5%30.5%10.6%26.4%37.00%−0.429+0.030
COX3Cytochrome c oxidase subunit III784 bp31.0%29.5%14.3%25.3%39.54%−0.277+0.025
ND3NADH dehydrogenase subunit 3348 bp33.3%30.7%11.2%24.7%35.92%−0.376+0.040
ND4LNADH dehydrogenase subunit 4L297 bp31.6%32.7%10.8%24.9%35.69%−0.396−0.016
ND4NADH dehydrogenase subunit 41,378 bp35.1%29.3%10.1%25.5%35.63%−0.434+0.089
ND5NADH dehydrogenase subunit 51,815 bp35.0%29.7%9.9%25.5%35.32%−0.442+0.082
ND6NADH dehydrogenase subunit 6528 bp40.5%20.6%8.7%30.1%38.83%−0.551+0.325
CYTBCytochrome b1,144 bp32.3%28.2%12.8%26.7%39.51%−0.354+0.066
12S rRNA12S ribosomal RNA954 bp37.5%24.6%17.5%20.3%37.84%−0.075+0.207
16S rRNA16S ribosomal RNA1,532 bp38.3%24.9%16.8%20.0%36.82%−0.089+0.213
D-loopControl region (D-loop)897 bp31.9%33.7%12.5%22.0%34.45%−0.275−0.027

Codon usage

Counts per codon, darker is more frequent

3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU104
UUC134
Leu L15.2%
UUA153
UUG12
CUU66
CUC48
CUA277
CUG20
Ile I9.3%
AUU207
AUC148
Met M6.4%
AUA208
AUG34
Val V4.6%
GUU28
GUC21
GUA111
GUG16
Ser S7.8%
UCU52
UCC52
UCA135
UCG8
AGU18
AGC30
Pro P5.3%
CCU33
CCC39
CCA123
CCG5
Thr T8.5%
ACU60
ACC74
ACA183
ACG5
Ala A6.2%
GCU55
GCC87
GCA87
GCG6
Tyr Y3.3%
UAU64
UAC61
His H2.5%
CAU32
CAC62
Gln Q2.1%
CAA77
CAG4
Asn N4.7%
AAU71
AAC108
Lys K2.7%
AAA93
AAG9
Asp D1.8%
GAU31
GAC37
Glu E2.5%
GAA73
GAG21
Cys C0.8%
UGU9
UGC21
Trp W2.7%
UGA97
UGG4
Arg R1.7%
CGU3
CGC13
CGA47
CGG1
Gly G5.6%
GGU36
GGC30
GGA111
GGG36
Stop 0.2%
UAA7
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_039921.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (36.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA711,024954 bp+37.8%
tRNA-ValTransfer RNA1,0251,09672 bp+–
16S rRNARibosomal RNA1,0952,6261,532 bp+36.8%
tRNA-Leu (UUR)Transfer RNA2,6672,74175 bp+–
ND1Protein-coding gene2,7423,696955 bp+38.0%
tRNA-IleTransfer RNA3,6973,76569 bp+–
tRNA-GlnTransfer RNA3,7633,83371 bp−–
tRNA-MetTransfer RNA3,8383,90669 bp+–
ND2Protein-coding gene3,9074,9431,037 bp+34.8%
tRNA-TrpTransfer RNA4,9445,00966 bp+–
tRNA-AlaTransfer RNA5,0115,07969 bp−–
tRNA-AsnTransfer RNA5,0825,15170 bp−–
tRNA-CysTransfer RNA5,1835,25068 bp−–
tRNA-TyrTransfer RNA5,2515,31868 bp−–
COX1Protein-coding gene5,3206,8641,545 bp+39.5%
tRNA-Ser (UCN)Transfer RNA6,8626,93069 bp−–
tRNA-AspTransfer RNA6,9347,00168 bp+–
COX2Protein-coding gene7,0037,686684 bp+37.6%
tRNA-LysTransfer RNA7,6907,75465 bp+–
ATP8Protein-coding gene7,7567,959204 bp+34.3%
ATP6Protein-coding gene7,9178,597681 bp+37.0%
COX3Protein-coding gene8,5979,380784 bp+39.5%
tRNA-GlyTransfer RNA9,3819,44969 bp+–
ND3Protein-coding gene9,4509,797348 bp+35.9%
tRNA-ArgTransfer RNA9,7999,86668 bp+–
ND4LProtein-coding gene9,86910,165297 bp+35.7%
ND4Protein-coding gene10,15911,5361,378 bp+35.6%
tRNA-HisTransfer RNA11,53711,60569 bp+–
tRNA-Ser (AGY)Transfer RNA11,60611,66459 bp+–
tRNA-Leu (CUN)Transfer RNA11,66411,73370 bp+–
ND5Protein-coding gene11,73413,5481,815 bp+35.3%
ND6Protein-coding gene13,54514,072528 bp−38.8%
tRNA-GluTransfer RNA14,07314,14169 bp−–
CYTBProtein-coding gene14,14715,2901,144 bp+39.5%
tRNA-ThrTransfer RNA15,29115,35868 bp+–
tRNA-ProTransfer RNA15,35915,42567 bp−–
D-loopControl region15,42616,322897 bp–34.5%

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