MitoAge

Peromyscus polionotus

Oldfield mouse

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Maximum lifespan
5.5 yr
AnAge record
mtDNA size
16,413 bp
RefSeq NC_035571.1
GC content
37.15%
Whole genome
Non-coding
1,105 bp
Including the D-loop

Where Oldfield mouse sits among 2,335 species

Whole-genome GC content against maximum lifespan. Oldfield mouse has the 1,963rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Oldfield mouse
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,413 bp
GC skew (G − C) / (G + C)
−0.310
AT skew (A − T) / (A + T)
+0.110

Life history

Maximum lifespan
5.5 years
Adult weight
14 g
Birth weight
1.7 g
Basal metabolic rate
0.12 W
Female sexual maturity
28 days
Gestation or incubation
24 days
Litter or clutch size
3.8
Litters per year
3
Postnatal growth rate
0.0558 per day

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02918)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,413 bp
Protein-coding11,348 bp
12S rRNA953 bp
16S rRNA1,512 bp
All tRNA1,501 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp34.8%28.0%11.8%25.4%37.20%−0.365+0.108
ND2NADH dehydrogenase subunit 21,038 bp39.5%25.4%7.5%27.6%35.07%−0.571+0.217
COX1Cytochrome c oxidase subunit I1,545 bp29.7%30.7%16.6%22.9%39.55%−0.159−0.017
COX2Cytochrome c oxidase subunit II684 bp35.2%25.9%13.3%25.6%38.89%−0.316+0.153
ATP8ATP synthase F0 subunit 8204 bp38.7%28.4%6.9%26.0%32.84%−0.582+0.153
ATP6ATP synthase F0 subunit 6681 bp32.5%29.7%10.4%27.5%37.89%−0.450+0.045
COX3Cytochrome c oxidase subunit III784 bp30.6%28.3%14.5%26.5%41.07%−0.292+0.039
ND3NADH dehydrogenase subunit 3348 bp33.6%30.5%11.8%24.1%35.92%−0.344+0.049
ND4LNADH dehydrogenase subunit 4L297 bp31.6%31.6%10.8%25.9%36.70%−0.4130.000
ND4NADH dehydrogenase subunit 41,378 bp35.1%28.8%10.2%26.0%36.14%−0.438+0.098
ND5NADH dehydrogenase subunit 51,815 bp34.8%28.6%10.1%26.5%36.64%−0.447+0.097
ND6NADH dehydrogenase subunit 6528 bp40.7%20.3%8.5%30.5%39.02%−0.563+0.335
CYTBCytochrome b1,144 bp32.0%28.1%12.8%27.0%39.86%−0.355+0.064
12S rRNA12S ribosomal RNA953 bp37.3%25.0%17.6%20.1%37.78%−0.067+0.197
16S rRNA16S ribosomal RNA1,512 bp38.8%24.7%17.0%19.4%36.44%−0.067+0.222

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%
UUU105
UUC128
Leu L15.2%
UUA137
UUG11
CUU61
CUC55
CUA294
CUG21
Ile I9.2%
AUU191
AUC158
Met M6.4%
AUA211
AUG32
Val V4.8%
GUU31
GUC18
GUA114
GUG20
Ser S7.9%
UCU48
UCC52
UCA137
UCG10
AGU20
AGC34
Pro P5.3%
CCU36
CCC31
CCA129
CCG5
Thr T8.3%
ACU59
ACC75
ACA178
ACG5
Ala A6.2%
GCU53
GCC90
GCA89
GCG4
Tyr Y3.3%
UAU59
UAC66
His H2.5%
CAU30
CAC66
Gln Q2.1%
CAA76
CAG4
Asn N4.6%
AAU61
AAC112
Lys K2.7%
AAA96
AAG7
Asp D1.8%
GAU30
GAC39
Glu E2.5%
GAA72
GAG22
Cys C0.8%
UGU9
UGC21
Trp W2.7%
UGA95
UGG6
Arg R1.7%
CGU5
CGC12
CGA47
CGG1
Gly G5.6%
GGU37
GGC29
GGA109
GGG37
Stop 0.3%
UAA8
UAG2
AGA0
AGG0

Genome map

37 annotated features in NC_035571.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (37.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA29135868 bp+–
12S rRNARibosomal RNA3611,313953 bp+37.8%
tRNA-ValTransfer RNA1,3141,38572 bp+–
16S rRNARibosomal RNA1,4312,9421,512 bp+36.4%
tRNA-Leu (UUR)Transfer RNA2,9583,03376 bp+–
ND1Protein-coding gene3,0343,990957 bp+37.2%
tRNA-IleTransfer RNA3,9884,05871 bp+–
tRNA-GlnTransfer RNA4,0554,12470 bp−–
tRNA-MetTransfer RNA4,1304,19869 bp+–
ND2Protein-coding gene4,1995,2361,038 bp+35.1%
tRNA-TrpTransfer RNA5,2375,30064 bp+–
tRNA-AlaTransfer RNA5,3025,37069 bp−–
tRNA-AsnTransfer RNA5,3735,44270 bp−–
tRNA-CysTransfer RNA5,4745,54168 bp−–
tRNA-TyrTransfer RNA5,5425,60968 bp−–
COX1Protein-coding gene5,6117,1551,545 bp+39.6%
tRNA-Ser (UCN)Transfer RNA7,1537,22169 bp−–
tRNA-AspTransfer RNA7,2257,29268 bp+–
COX2Protein-coding gene7,2947,977684 bp+38.9%
tRNA-LysTransfer RNA7,9818,04565 bp+–
ATP8Protein-coding gene8,0478,250204 bp+32.8%
ATP6Protein-coding gene8,2088,888681 bp+37.9%
COX3Protein-coding gene8,8889,671784 bp+41.1%
tRNA-GlyTransfer RNA9,6729,74069 bp+–
ND3Protein-coding gene9,74110,088348 bp+35.9%
tRNA-ArgTransfer RNA10,09010,15768 bp+–
ND4LProtein-coding gene10,16010,456297 bp+36.7%
ND4Protein-coding gene10,45011,8271,378 bp+36.1%
tRNA-HisTransfer RNA11,82811,89669 bp+–
tRNA-Ser (AGY)Transfer RNA11,89711,95458 bp+–
tRNA-Leu (CUN)Transfer RNA11,95512,02470 bp+–
ND5Protein-coding gene12,02513,8391,815 bp+36.6%
ND6Protein-coding gene13,83614,363528 bp−39.0%
tRNA-GluTransfer RNA14,36414,43269 bp−–
CYTBProtein-coding gene14,43815,5811,144 bp+39.9%
tRNA-ThrTransfer RNA15,58215,64968 bp+–
tRNA-ProTransfer RNA15,65015,71667 bp−–

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