Phelsuma guimbeaui
Orange-spotted day gecko
Retired record. RefSeq NC_025781.1 is not in NCBI RefSeq release 237 (mitochondrion.1.genomic.gbff.gz, file date 2026-09-03) (suppressed) and the release has no other complete mitogenome of NCBI species 232314 (Phelsuma guimbeaui); no longer qualifies under the RefSeq-only rule Its build 1 values are kept and it is left out of the correlations.
GC content
39.55%
Whole genome
Non-coding
2,207 bp
Including the D-loop
Where Orange-spotted day gecko sits among 2,335 species
Whole-genome GC content against maximum lifespan. Orange-spotted day gecko has the 1,810th longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome17,533 bp
- GC skew (G − C) / (G + C)
- −0.331
- AT skew (A − T) / (A + T)
- +0.116
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Retired
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,533 bp
Protein-coding11,341 bp
12S rRNA948 bp
16S rRNA1,549 bp
All tRNA1,524 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 969 bp | 38.80% | −0.335 | +0.093 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,033 bp | 36.50% | −0.544 | +0.192 | |||||
| COX1Cytochrome c oxidase subunit I | 1,590 bp | 42.45% | −0.250 | −0.034 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 41.13% | −0.279 | +0.180 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 38.18% | −0.524 | +0.137 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 35.68% | −0.490 | +0.078 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 43.24% | −0.304 | +0.025 | |||||
| ND3NADH dehydrogenase subunit 3 | 346 bp | 37.57% | −0.400 | +0.019 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 40.74% | −0.355 | +0.068 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,365 bp | 38.97% | −0.500 | +0.136 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,791 bp | 39.25% | −0.451 | +0.189 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 40.08% | −0.577 | +0.511 | |||||
| CYTBCytochrome b | 1,137 bp | 42.13% | −0.361 | +0.033 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 40.93% | −0.155 | +0.214 | |||||
| 16S rRNA16S ribosomal RNA | 1,549 bp | 39.90% | −0.181 | +0.261 |
Codon usage
Counts per codon, darker is more frequent3,787 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU107
UUC113
Leu L16.1%
UUA135
UUG27
CUU90
CUC46
CUA279
CUG33
Ile I7.8%
AUU160
AUC136
Met M6.9%
AUA227
AUG34
Val V4.5%
GUU49
GUC26
GUA80
GUG17
Ser S6.5%
UCU25
UCC56
UCA100
UCG4
AGU19
AGC41
Pro P5.7%
CCU19
CCC53
CCA141
CCG4
Thr T9.8%
ACU58
ACC132
ACA177
ACG6
Ala A6.9%
GCU42
GCC92
GCA120
GCG9
Tyr Y3.4%
UAU57
UAC71
His H2.8%
CAU34
CAC71
Gln Q2.5%
CAA92
CAG3
Asn N3.5%
AAU44
AAC88
Lys K2.5%
AAA87
AAG9
Asp D1.8%
GAU21
GAC46
Glu E2.2%
GAA72
GAG13
Cys C0.8%
UGU13
UGC16
Trp W2.7%
UGA88
UGG15
Arg R1.8%
CGU9
CGC22
CGA37
CGG2
Gly G5.6%
GGU33
GGC65
GGA83
GGG30
Stop 0.2%
UAA5
UAG3
AGA0
AGG1
Genome map
40 annotated features in NC_025781.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop3
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (39.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 40 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 67 | 67 bp | + | – |
| 12S rRNA | Ribosomal RNA | 68 | 1,015 | 948 bp | + | 40.9% |
| tRNA-Val | Transfer RNA | 1,016 | 1,081 | 66 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,082 | 2,630 | 1,549 bp | + | 39.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,635 | 2,713 | 79 bp | + | – |
| ND1 | Protein-coding gene | 2,715 | 3,683 | 969 bp | + | 38.8% |
| tRNA-Ile | Transfer RNA | 3,687 | 3,762 | 76 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,761 | 3,833 | 73 bp | − | – |
| tRNA-Met | Transfer RNA | 3,832 | 3,901 | 70 bp | + | – |
| ND2 | Protein-coding gene | 3,902 | 4,934 | 1,033 bp | + | 36.5% |
| tRNA-Trp | Transfer RNA | 4,935 | 5,004 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,004 | 5,072 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,074 | 5,146 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,175 | 5,239 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,243 | 5,312 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,314 | 6,903 | 1,590 bp | + | 42.5% |
| tRNA-Ser (UCN) | Transfer RNA | 6,870 | 6,942 | 73 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,946 | 7,013 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,014 | 7,701 | 688 bp | + | 41.1% |
| tRNA-Lys | Transfer RNA | 7,700 | 7,763 | 64 bp | + | – |
| ATP8 | Protein-coding gene | 7,764 | 7,928 | 165 bp | + | 38.2% |
| ATP6 | Protein-coding gene | 7,919 | 8,599 | 681 bp | + | 35.7% |
| COX3 | Protein-coding gene | 8,599 | 9,382 | 784 bp | + | 43.2% |
| tRNA-Gly | Transfer RNA | 9,383 | 9,449 | 67 bp | + | – |
| ND3 | Protein-coding gene | 9,450 | 9,795 | 346 bp | + | 37.6% |
| tRNA-Arg | Transfer RNA | 9,796 | 9,863 | 68 bp | + | – |
| ND4L | Protein-coding gene | 9,866 | 10,162 | 297 bp | + | 40.7% |
| ND4 | Protein-coding gene | 10,156 | 11,520 | 1,365 bp | + | 39.0% |
| tRNA-His | Transfer RNA | 11,526 | 11,594 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,595 | 11,654 | 60 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,654 | 11,725 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,727 | 13,517 | 1,791 bp | + | 39.3% |
| ND6 | Protein-coding gene | 13,512 | 14,030 | 519 bp | − | 40.1% |
| tRNA-Glu | Transfer RNA | 14,031 | 14,103 | 73 bp | − | – |
| CYTB | Protein-coding gene | 14,107 | 15,243 | 1,137 bp | + | 42.1% |
| tRNA-Thr | Transfer RNA | 15,248 | 15,319 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,320 | 15,385 | 66 bp | − | – |
| D-loop | Control region | 16,309 | 16,332 | 24 bp | – | – |
| D-loop | Control region | 16,586 | 16,601 | 16 bp | – | – |
| D-loop | Control region | 16,636 | 16,653 | 18 bp | – | – |