Phenacobius mirabilis
Suckermouth minnow
GC content
43.63%
Whole genome
Non-coding
1,282 bp
Including the D-loop
Where Suckermouth minnow sits among 2,335 species
Whole-genome GC content against maximum lifespan. Suckermouth minnow has the 2,181st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,884 bp
- GC skew (G − C) / (G + C)
- −0.205
- AT skew (A − T) / (A + T)
- +0.020
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,884 bp
Protein-coding11,406 bp
12S rRNA962 bp
16S rRNA1,674 bp
All tRNA1,564 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.41% | −0.229 | −0.114 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 46.80% | −0.343 | −0.005 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.42% | −0.155 | −0.109 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.82% | −0.218 | +0.030 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 37.58% | −0.484 | +0.107 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.52% | −0.352 | −0.040 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.03% | −0.235 | −0.067 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 44.16% | −0.265 | −0.092 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 44.11% | −0.298 | −0.084 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.16% | −0.265 | −0.019 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 41.61% | −0.272 | −0.019 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 41.95% | −0.379 | +0.340 | |||||
| CYTBCytochrome b | 1,141 bp | 42.51% | −0.258 | −0.095 | |||||
| 12S rRNA12S ribosomal RNA | 962 bp | 48.34% | −0.071 | +0.199 | |||||
| 16S rRNA16S ribosomal RNA | 1,674 bp | 44.98% | −0.054 | +0.220 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU119
UUC111
Leu L16.6%
UUA179
UUG27
CUU137
CUC104
CUA145
CUG40
Ile I7.2%
AUU176
AUC100
Met M4.7%
AUA115
AUG63
Val V6.1%
GUU60
GUC49
GUA100
GUG23
Ser S6.1%
UCU55
UCC55
UCA64
UCG8
AGU16
AGC36
Pro P5.6%
CCU56
CCC70
CCA74
CCG15
Thr T7.7%
ACU62
ACC98
ACA119
ACG16
Ala A9.1%
GCU75
GCC134
GCA120
GCG18
Tyr Y3.0%
UAU59
UAC56
His H2.8%
CAU37
CAC68
Gln Q2.5%
CAA77
CAG18
Asn N3.1%
AAU53
AAC64
Lys K2.2%
AAA63
AAG19
Asp D2.0%
GAU32
GAC43
Glu E2.7%
GAA71
GAG31
Cys C0.7%
UGU13
UGC13
Trp W3.2%
UGA89
UGG31
Arg R2.0%
CGU12
CGC20
CGA33
CGG12
Gly G6.4%
GGU42
GGC66
GGA75
GGG62
Stop 0.2%
UAA7
UAG2
AGA0
AGG0
Genome map
37 annotated features in NC_008112.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,031 | 962 bp | + | 48.3% |
| tRNA-Val | Transfer RNA | 1,032 | 1,103 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,104 | 2,777 | 1,674 bp | + | 45.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,778 | 2,855 | 78 bp | + | – |
| ND1 | Protein-coding gene | 2,856 | 3,830 | 975 bp | + | 44.4% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,907 | 74 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,905 | 3,975 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,977 | 4,045 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,046 | 5,092 | 1,047 bp | + | 46.8% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,161 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,164 | 5,231 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,233 | 5,305 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,410 | 72 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,407 | 5,478 | 72 bp | − | – |
| COX1 | Protein-coding gene | 5,480 | 7,030 | 1,551 bp | + | 44.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,031 | 7,101 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,104 | 7,176 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,183 | 7,873 | 691 bp | + | 41.8% |
| tRNA-Lys | Transfer RNA | 7,874 | 7,949 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,951 | 8,115 | 165 bp | + | 37.6% |
| ATP6 | Protein-coding gene | 8,109 | 8,792 | 684 bp | + | 41.5% |
| COX3 | Protein-coding gene | 8,792 | 9,575 | 784 bp | + | 45.0% |
| tRNA-Gly | Transfer RNA | 9,576 | 9,647 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,648 | 9,998 | 351 bp | + | 44.2% |
| tRNA-Arg | Transfer RNA | 9,997 | 10,065 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,066 | 10,362 | 297 bp | + | 44.1% |
| ND4 | Protein-coding gene | 10,356 | 11,736 | 1,381 bp | + | 43.2% |
| tRNA-His | Transfer RNA | 11,738 | 11,806 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,807 | 11,874 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,876 | 11,948 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,949 | 13,784 | 1,836 bp | + | 41.6% |
| ND6 | Protein-coding gene | 13,781 | 14,302 | 522 bp | − | 42.0% |
| tRNA-Glu | Transfer RNA | 14,303 | 14,371 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,377 | 15,517 | 1,141 bp | + | 42.5% |
| tRNA-Thr | Transfer RNA | 15,518 | 15,589 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,728 | 15,797 | 70 bp | + | – |