MitoAge

Phocoena phocoena

Harbor porpoise

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Maximum lifespan
20.4 yr
AnAge record
mtDNA size
16,382 bp
RefSeq NC_005280.1
GC content
40.57%
Whole genome
Non-coding
975 bp
D-loop 909 bp

Where Harbor porpoise sits among 2,335 species

Whole-genome GC content against maximum lifespan. Harbor porpoise has the 879th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Harbor porpoise
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,382 bp
GC skew (G − C) / (G + C)
−0.330
AT skew (A − T) / (A + T)
+0.077

Life history

Maximum lifespan
20.4 years
Adult weight
52.5 kg
Birth weight
7 kg
Basal metabolic rate
107.675 W
Female sexual maturity
2.9 years
Male sexual maturity
4 years
Gestation or incubation
320 days
Litter or clutch size
1
Litters per year
1
Postnatal growth rate
0.0088 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02317)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,382 bp
Protein-coding11,352 bp
12S rRNA974 bp
16S rRNA1,581 bp
All tRNA1,512 bp
D-loop909 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp30.3%28.0%12.4%29.3%41.69%−0.404+0.039
ND2NADH dehydrogenase subunit 21,044 bp34.9%27.3%8.0%29.8%37.84%−0.575+0.122
COX1Cytochrome c oxidase subunit I1,554 bp27.5%30.1%17.4%25.1%42.47%−0.182−0.045
COX2Cytochrome c oxidase subunit II684 bp32.7%28.1%14.8%24.4%39.18%−0.246+0.077
ATP8ATP synthase F0 subunit 8192 bp34.9%22.4%7.3%35.4%42.71%−0.659+0.218
ATP6ATP synthase F0 subunit 6681 bp30.0%28.8%11.7%29.5%41.26%−0.431+0.020
COX3Cytochrome c oxidase subunit III786 bp26.6%30.0%14.5%28.9%43.38%−0.331−0.061
ND3NADH dehydrogenase subunit 3346 bp29.8%28.6%12.4%29.2%41.62%−0.403+0.020
ND4LNADH dehydrogenase subunit 4L297 bp27.9%31.6%12.8%27.6%40.40%−0.367−0.062
ND4NADH dehydrogenase subunit 41,378 bp31.1%29.4%10.7%28.7%39.48%−0.456+0.029
ND5NADH dehydrogenase subunit 51,821 bp31.1%27.6%10.5%30.8%41.30%−0.489+0.059
ND6NADH dehydrogenase subunit 6528 bp42.4%19.7%7.6%30.3%37.88%−0.600+0.366
CYTBCytochrome b1,140 bp30.1%26.4%13.2%30.4%43.51%−0.395+0.065
12S rRNA12S ribosomal RNA974 bp35.5%21.6%18.8%24.1%42.92%−0.124+0.245
16S rRNA16S ribosomal RNA1,581 bp36.7%25.3%17.5%20.4%37.95%−0.077+0.185
D-loopControl region (D-loop)909 bp29.6%30.4%14.1%26.0%40.04%−0.297−0.013

Codon usage

Counts per codon, darker is more frequent

3,802 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU110
UUC130
Leu L16.8%
UUA116
UUG23
CUU80
CUC117
CUA257
CUG44
Ile I8.3%
AUU142
AUC173
Met M6.3%
AUA192
AUG47
Val V4.6%
GUU41
GUC37
GUA68
GUG27
Ser S6.9%
UCU47
UCC70
UCA86
UCG8
AGU15
AGC36
Pro P5.4%
CCU64
CCC76
CCA61
CCG3
Thr T8.8%
ACU61
ACC106
ACA159
ACG8
Ala A6.7%
GCU54
GCC102
GCA93
GCG4
Tyr Y3.3%
UAU62
UAC62
His H2.6%
CAU30
CAC67
Gln Q2.6%
CAA86
CAG11
Asn N4.2%
AAU58
AAC101
Lys K2.5%
AAA83
AAG11
Asp D1.8%
GAU23
GAC44
Glu E2.4%
GAA70
GAG21
Cys C0.6%
UGU14
UGC8
Trp W2.7%
UGA91
UGG13
Arg R1.7%
CGU8
CGC16
CGA38
CGG2
Gly G5.7%
GGU49
GGC62
GGA75
GGG29
Stop 0.3%
UAA5
UAG4
AGA1
AGG1

Genome map

38 annotated features in NC_005280.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,044974 bp+42.9%
tRNA-ValTransfer RNA1,0451,11167 bp+–
16S rRNARibosomal RNA1,1122,6921,581 bp+38.0%
tRNA-Leu (UUR)Transfer RNA2,6932,76775 bp+–
ND1Protein-coding gene2,7693,725957 bp+41.7%
tRNA-IleTransfer RNA3,7313,79969 bp+–
tRNA-GlnTransfer RNA3,7973,86973 bp−–
tRNA-MetTransfer RNA3,8713,93969 bp+–
ND2Protein-coding gene3,9404,9831,044 bp+37.8%
tRNA-TrpTransfer RNA4,9825,05069 bp+–
tRNA-AlaTransfer RNA5,0565,12469 bp−–
tRNA-AsnTransfer RNA5,1265,19974 bp−–
tRNA-CysTransfer RNA5,2325,29867 bp−–
tRNA-TyrTransfer RNA5,2995,36567 bp−–
COX1Protein-coding gene5,3676,9201,554 bp+42.5%
tRNA-Ser (UCN)Transfer RNA6,9126,98069 bp−–
tRNA-AspTransfer RNA6,9887,05568 bp+–
COX2Protein-coding gene7,0567,739684 bp+39.2%
tRNA-LysTransfer RNA7,7437,80765 bp+–
ATP8Protein-coding gene7,8128,003192 bp+42.7%
ATP6Protein-coding gene7,9738,653681 bp+41.3%
COX3Protein-coding gene8,6539,438786 bp+43.4%
tRNA-GlyTransfer RNA9,4389,50669 bp+–
ND3Protein-coding gene9,5079,852346 bp+41.6%
tRNA-ArgTransfer RNA9,8549,92370 bp+–
ND4LProtein-coding gene9,92410,220297 bp+40.4%
ND4Protein-coding gene10,21411,5911,378 bp+39.5%
tRNA-HisTransfer RNA11,59211,65968 bp+–
tRNA-Ser (AGY)Transfer RNA11,66011,72061 bp+–
tRNA-Leu (CUN)Transfer RNA11,72211,79170 bp+–
ND5Protein-coding gene11,79213,6121,821 bp+41.3%
ND6Protein-coding gene13,59614,123528 bp−37.9%
tRNA-GluTransfer RNA14,12414,19269 bp−–
CYTBProtein-coding gene14,19715,3361,140 bp+43.5%
tRNA-ThrTransfer RNA15,33715,40670 bp+–
tRNA-ProTransfer RNA15,40615,47368 bp−–
D-loopControl region15,47416,382909 bp–40.0%

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