Pholis gunnellus
Rock gunnel
GC content
46.62%
Whole genome
Non-coding
927 bp
D-loop 855 bp
Where Rock gunnel sits among 2,335 species
Whole-genome GC content against maximum lifespan. Rock gunnel has the 2,006th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,525 bp
- GC skew (G − C) / (G + C)
- −0.210
- AT skew (A − T) / (A + T)
- −0.034
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,525 bp
Protein-coding11,407 bp
12S rRNA948 bp
16S rRNA1,693 bp
All tRNA1,550 bp
D-loop855 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.03% | −0.251 | −0.203 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.38% | −0.368 | −0.107 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.42% | −0.148 | −0.170 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.42% | −0.227 | −0.054 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.83% | −0.351 | +0.055 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.76% | −0.380 | −0.116 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.17% | −0.218 | −0.103 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.00% | −0.228 | −0.236 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.84% | −0.298 | −0.178 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.27% | −0.246 | −0.108 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.04% | −0.281 | −0.084 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 50.00% | −0.349 | +0.364 | |||||
| CYTBCytochrome b | 1,141 bp | 47.59% | −0.274 | −0.157 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 47.57% | −0.073 | +0.171 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 45.78% | −0.055 | +0.159 | |||||
| D-loopControl region (D-loop) | 855 bp | 38.88% | −0.102 | +0.038 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU135
UUC94
Leu L17.2%
UUA84
UUG35
CUU210
CUC124
CUA136
CUG67
Ile I6.9%
AUU161
AUC100
Met M3.9%
AUA75
AUG75
Val V6.1%
GUU92
GUC52
GUA59
GUG31
Ser S6.6%
UCU51
UCC80
UCA50
UCG9
AGU16
AGC44
Pro P5.8%
CCU71
CCC87
CCA44
CCG18
Thr T7.8%
ACU54
ACC125
ACA94
ACG23
Ala A9.2%
GCU78
GCC158
GCA92
GCG24
Tyr Y2.9%
UAU50
UAC62
His H2.8%
CAU37
CAC68
Gln Q2.7%
CAA62
CAG41
Asn N2.9%
AAU46
AAC66
Lys K1.9%
AAA45
AAG27
Asp D2.0%
GAU28
GAC48
Glu E2.6%
GAA54
GAG44
Cys C0.7%
UGU9
UGC16
Trp W3.1%
UGA80
UGG39
Arg R2.0%
CGU14
CGC16
CGA27
CGG20
Gly G6.6%
GGU38
GGC82
GGA61
GGG71
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_052755.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
Not drawn: D-loop 1,089–16,525, annotated over most of the record.
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 47.6% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,090 | 2,782 | 1,693 bp | + | 45.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,783 | 2,856 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,857 | 3,831 | 975 bp | + | 49.0% |
| tRNA-Ile | Transfer RNA | 3,836 | 3,905 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,905 | 3,975 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,975 | 4,043 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,044 | 5,089 | 1,046 bp | + | 48.4% |
| tRNA-Trp | Transfer RNA | 5,090 | 5,160 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,162 | 5,230 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,232 | 5,304 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,343 | 5,408 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,409 | 5,479 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,481 | 7,031 | 1,551 bp | + | 45.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,178 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,192 | 7,882 | 691 bp | + | 43.4% |
| tRNA-Lys | Transfer RNA | 7,883 | 7,956 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,958 | 8,125 | 168 bp | + | 45.8% |
| ATP6 | Protein-coding gene | 8,116 | 8,799 | 684 bp | + | 45.8% |
| COX3 | Protein-coding gene | 8,799 | 9,583 | 785 bp | + | 49.2% |
| tRNA-Gly | Transfer RNA | 9,584 | 9,654 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,655 | 10,003 | 349 bp | + | 49.0% |
| tRNA-Arg | Transfer RNA | 10,004 | 10,072 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,073 | 10,369 | 297 bp | + | 50.8% |
| ND4 | Protein-coding gene | 10,363 | 11,743 | 1,381 bp | + | 46.3% |
| tRNA-His | Transfer RNA | 11,744 | 11,812 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,813 | 11,880 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,886 | 11,958 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,959 | 13,797 | 1,839 bp | + | 47.0% |
| ND6 | Protein-coding gene | 13,794 | 14,315 | 522 bp | − | 50.0% |
| tRNA-Glu | Transfer RNA | 14,316 | 14,384 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,390 | 15,530 | 1,141 bp | + | 47.6% |
| tRNA-Thr | Transfer RNA | 15,531 | 15,602 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,602 | 15,671 | 70 bp | − | – |