Pimephales notatus
Bluntnose minnow
GC content
42.80%
Whole genome
Non-coding
1,108 bp
D-loop 1,053 bp
Where Bluntnose minnow sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bluntnose minnow has the 2,003rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,711 bp
- GC skew (G − C) / (G + C)
- −0.203
- AT skew (A − T) / (A + T)
- +0.022
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,711 bp
Protein-coding11,403 bp
12S rRNA957 bp
16S rRNA1,682 bp
All tRNA1,561 bp
D-loop1,053 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.10% | −0.219 | −0.123 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 44.02% | −0.361 | +0.026 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.04% | −0.156 | −0.086 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 39.65% | −0.175 | +0.022 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 37.58% | −0.548 | +0.184 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 41.29% | −0.333 | −0.057 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 42.86% | −0.196 | −0.058 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 39.83% | −0.209 | −0.067 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 41.41% | −0.268 | −0.057 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 41.97% | −0.300 | −0.042 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 40.74% | −0.302 | −0.004 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.49% | −0.357 | +0.342 | |||||
| CYTBCytochrome b | 1,141 bp | 43.56% | −0.280 | −0.053 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 49.74% | −0.055 | +0.222 | |||||
| 16S rRNA16S ribosomal RNA | 1,682 bp | 44.89% | −0.036 | +0.219 | |||||
| D-loopControl region (D-loop) | 1,053 bp | 35.71% | −0.160 | −0.016 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU125
UUC104
Leu L16.4%
UUA152
UUG21
CUU165
CUC78
CUA170
CUG39
Ile I7.1%
AUU200
AUC69
Met M4.6%
AUA120
AUG54
Val V6.4%
GUU67
GUC39
GUA119
GUG19
Ser S6.2%
UCU53
UCC49
UCA78
UCG5
AGU11
AGC41
Pro P5.6%
CCU64
CCC52
CCA88
CCG10
Thr T8.0%
ACU75
ACC95
ACA118
ACG18
Ala A9.1%
GCU68
GCC130
GCA130
GCG18
Tyr Y3.0%
UAU54
UAC59
His H2.8%
CAU45
CAC62
Gln Q2.5%
CAA80
CAG15
Asn N3.0%
AAU54
AAC62
Lys K2.1%
AAA66
AAG13
Asp D2.0%
GAU32
GAC43
Glu E2.7%
GAA72
GAG29
Cys C0.7%
UGU8
UGC19
Trp W3.2%
UGA113
UGG7
Arg R2.0%
CGU14
CGC10
CGA42
CGG11
Gly G6.4%
GGU43
GGC59
GGA89
GGG53
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_033941.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,026 | 957 bp | + | 49.7% |
| tRNA-Val | Transfer RNA | 1,027 | 1,098 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,099 | 2,780 | 1,682 bp | + | 44.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,781 | 2,856 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,858 | 3,832 | 975 bp | + | 44.1% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,908 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,907 | 3,977 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,979 | 4,047 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,048 | 5,092 | 1,045 bp | + | 44.0% |
| tRNA-Trp | Transfer RNA | 5,093 | 5,163 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,165 | 5,233 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,235 | 5,307 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,338 | 5,406 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,407 | 5,476 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,478 | 7,028 | 1,551 bp | + | 42.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,029 | 7,099 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,103 | 7,175 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,183 | 7,873 | 691 bp | + | 39.7% |
| tRNA-Lys | Transfer RNA | 7,874 | 7,949 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,951 | 8,115 | 165 bp | + | 37.6% |
| ATP6 | Protein-coding gene | 8,109 | 8,791 | 683 bp | + | 41.3% |
| COX3 | Protein-coding gene | 8,792 | 9,575 | 784 bp | + | 42.9% |
| tRNA-Gly | Transfer RNA | 9,576 | 9,647 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,648 | 9,996 | 349 bp | + | 39.8% |
| tRNA-Arg | Transfer RNA | 9,997 | 10,065 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,066 | 10,362 | 297 bp | + | 41.4% |
| ND4 | Protein-coding gene | 10,356 | 11,737 | 1,382 bp | + | 42.0% |
| tRNA-His | Transfer RNA | 11,738 | 11,806 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,807 | 11,875 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,877 | 11,949 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,950 | 13,785 | 1,836 bp | + | 40.7% |
| ND6 | Protein-coding gene | 13,782 | 14,303 | 522 bp | − | 43.5% |
| tRNA-Glu | Transfer RNA | 14,304 | 14,372 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,377 | 15,517 | 1,141 bp | + | 43.6% |
| tRNA-Thr | Transfer RNA | 15,518 | 15,589 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,589 | 15,658 | 70 bp | − | – |
| D-loop | Control region | 15,659 | 16,711 | 1,053 bp | – | 35.7% |