Pinna rudis
Rough pen shell
GC content
40.38%
Whole genome
Non-coding
3,205 bp
Including the D-loop
Where Rough pen shell sits among 2,335 species
Whole-genome GC content against maximum lifespan. Rough pen shell has the 426th longest lifespan of them.
- This species
- All other species
Base composition
Whole genome18,264 bp
- GC skew (G − C) / (G + C)
- +0.315
- AT skew (A − T) / (A + T)
- −0.163
About this record
- Lifespan source
- SeaLifeBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome18,264 bp
Protein-coding11,112 bp
12S rRNA948 bp
16S rRNA1,384 bp
All tRNA1,615 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 936 bp | 39.53% | +0.314 | −0.322 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,023 bp | 38.61% | +0.235 | −0.309 | |||||
| COX1Cytochrome c oxidase subunit I | 1,581 bp | 40.23% | +0.204 | −0.295 | |||||
| COX2Cytochrome c oxidase subunit II | 699 bp | 40.77% | +0.340 | −0.145 | |||||
| ATP6ATP synthase F0 subunit 6 | 735 bp | 41.36% | +0.401 | −0.244 | |||||
| COX3Cytochrome c oxidase subunit III | 825 bp | 40.61% | +0.248 | −0.216 | |||||
| ND3NADH dehydrogenase subunit 3 | 342 bp | 49.12% | +0.405 | −0.276 | |||||
| ND4LNADH dehydrogenase subunit 4L | 312 bp | 41.03% | +0.344 | −0.315 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,365 bp | 40.66% | +0.402 | −0.279 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,710 bp | 40.00% | +0.339 | −0.251 | |||||
| ND6NADH dehydrogenase subunit 6 | 459 bp | 39.22% | +0.422 | −0.190 | |||||
| CYTBCytochrome b | 1,167 bp | 39.16% | +0.256 | −0.318 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 43.88% | +0.236 | +0.026 | |||||
| 16S rRNA16S ribosomal RNA | 1,384 bp | 38.30% | +0.283 | +0.021 |
Codon usage
Counts per codon, darker is more frequent3,718 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F8.1%
UUU252
UUC48
Leu L13.0%
UUA169
UUG139
CUU83
CUC14
CUA45
CUG35
Ile I5.2%
AUU154
AUC39
Met M5.4%
AUA89
AUG112
Val V10.2%
GUU148
GUC26
GUA115
GUG92
Ser S9.4%
UCU85
UCC16
UCA23
UCG15
AGU51
AGC19
AGA58
AGG82
Pro P3.8%
CCU83
CCC14
CCA25
CCG18
Thr T3.6%
ACU85
ACC14
ACA20
ACG13
Ala A6.3%
GCU146
GCC27
GCA33
GCG27
Tyr Y3.9%
UAU95
UAC50
His H1.9%
CAU56
CAC13
Gln Q1.4%
CAA26
CAG27
Asn N1.9%
AAU47
AAC24
Lys K2.5%
AAA44
AAG48
Asp D1.9%
GAU49
GAC23
Glu E3.0%
GAA38
GAG73
Cys C2.5%
UGU71
UGC23
Trp W3.7%
UGA74
UGG63
Arg R2.2%
CGU30
CGC4
CGA27
CGG19
Gly G9.9%
GGU96
GGC31
GGA114
GGG127
Stop 0.3%
UAA7
UAG5
Genome map
37 annotated features in NC_060781.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding12
- rRNA2
- tRNA23
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (40.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| COX2 | Protein-coding gene | 1 | 699 | 699 bp | + | 40.8% |
| tRNA-Ile | Transfer RNA | 748 | 819 | 72 bp | + | – |
| tRNA-Val | Transfer RNA | 835 | 903 | 69 bp | + | – |
| tRNA-Lys | Transfer RNA | 906 | 980 | 75 bp | + | – |
| tRNA-Glu | Transfer RNA | 993 | 1,066 | 74 bp | + | – |
| tRNA-Pro | Transfer RNA | 1,092 | 1,159 | 68 bp | + | – |
| tRNA-Phe | Transfer RNA | 1,176 | 1,243 | 68 bp | + | – |
| tRNA-Asp | Transfer RNA | 1,315 | 1,390 | 76 bp | + | – |
| ND6 | Protein-coding gene | 1,490 | 1,948 | 459 bp | + | 39.2% |
| tRNA-Arg | Transfer RNA | 2,392 | 2,469 | 78 bp | + | – |
| ND3 | Protein-coding gene | 2,774 | 3,115 | 342 bp | + | 49.1% |
| tRNA-Asn | Transfer RNA | 3,130 | 3,200 | 71 bp | + | – |
| tRNA-Cys | Transfer RNA | 3,950 | 4,012 | 63 bp | + | – |
| tRNA-Cys | Transfer RNA | 4,153 | 4,215 | 63 bp | + | – |
| tRNA-Met | Transfer RNA | 4,532 | 4,604 | 73 bp | + | – |
| 12S rRNA | Ribosomal RNA | 4,606 | 5,553 | 948 bp | + | 43.9% |
| tRNA-Gly | Transfer RNA | 5,640 | 5,709 | 70 bp | + | – |
| tRNA-His | Transfer RNA | 5,727 | 5,795 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 5,838 | 7,221 | 1,384 bp | + | 38.3% |
| tRNA-Leu | Transfer RNA | 7,224 | 7,293 | 70 bp | + | – |
| ND1 | Protein-coding gene | 7,296 | 8,231 | 936 bp | + | 39.5% |
| tRNA-Leu | Transfer RNA | 8,253 | 8,322 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 8,339 | 8,407 | 69 bp | + | – |
| ND4L | Protein-coding gene | 8,409 | 8,720 | 312 bp | + | 41.0% |
| ND4 | Protein-coding gene | 8,714 | 10,078 | 1,365 bp | + | 40.7% |
| ND5 | Protein-coding gene | 10,301 | 12,010 | 1,710 bp | + | 40.0% |
| tRNA-Ser | Transfer RNA | 12,037 | 12,108 | 72 bp | + | – |
| ND2 | Protein-coding gene | 12,126 | 13,148 | 1,023 bp | + | 38.6% |
| tRNA-Tyr | Transfer RNA | 13,450 | 13,518 | 69 bp | + | – |
| tRNA-Thr | Transfer RNA | 13,541 | 13,614 | 74 bp | + | – |
| COX1 | Protein-coding gene | 13,616 | 15,196 | 1,581 bp | + | 40.2% |
| COX3 | Protein-coding gene | 15,268 | 16,092 | 825 bp | + | 40.6% |
| tRNA-Ser | Transfer RNA | 16,148 | 16,213 | 66 bp | + | – |
| tRNA-Ala | Transfer RNA | 16,233 | 16,301 | 69 bp | + | – |
| tRNA-Trp | Transfer RNA | 16,307 | 16,373 | 67 bp | + | – |
| ATP6 | Protein-coding gene | 16,379 | 17,113 | 735 bp | + | 41.4% |
| CYTB | Protein-coding gene | 17,079 | 18,245 | 1,167 bp | + | 39.2% |