MitoAge

Platalea minor

Black-faced spoonbill

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Maximum lifespan
15 yr
AnAge record
mtDNA size
16,918 bp
RefSeq NC_010962.1
GC content
44.63%
Whole genome
Non-coding
1,429 bp
D-loop 1,352 bp

Where Black-faced spoonbill sits among 2,335 species

Whole-genome GC content against maximum lifespan. Black-faced spoonbill has the 1,220th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Black-faced spoonbill
  • This species
  • Other birds
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,918 bp
GC skew (G − C) / (G + C)
−0.374
AT skew (A − T) / (A + T)
+0.124

Life history

Maximum lifespan
15 years
Adult weight
1.2 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01388)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,918 bp
Protein-coding11,377 bp
12S rRNA975 bp
16S rRNA1,599 bp
All tRNA1,549 bp
D-loop1,352 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1978 bp27.1%27.3%13.8%31.8%45.60%−0.395−0.004
ND2NADH dehydrogenase subunit 21,040 bp31.9%25.4%9.5%33.2%42.69%−0.554+0.114
COX1Cytochrome c oxidase subunit I1,551 bp28.5%25.6%16.3%29.6%45.91%−0.289+0.054
COX2Cytochrome c oxidase subunit II684 bp31.3%24.7%14.2%29.8%44.01%−0.355+0.117
ATP8ATP synthase F0 subunit 8168 bp31.5%25.6%7.1%35.7%42.86%−0.667+0.104
ATP6ATP synthase F0 subunit 6684 bp31.0%25.0%9.6%34.4%44.01%−0.561+0.107
COX3Cytochrome c oxidase subunit III784 bp28.7%25.1%14.7%31.5%46.17%−0.365+0.066
ND3NADH dehydrogenase subunit 3351 bp29.1%26.5%11.1%33.3%44.44%−0.500+0.046
ND4LNADH dehydrogenase subunit 4L297 bp26.9%23.6%13.8%35.7%49.50%−0.442+0.067
ND4NADH dehydrogenase subunit 41,378 bp31.3%24.1%10.7%34.0%44.63%−0.522+0.130
ND5NADH dehydrogenase subunit 51,815 bp32.2%23.5%11.2%33.1%44.24%−0.494+0.156
ND6NADH dehydrogenase subunit 6522 bp39.7%12.6%8.8%38.9%47.70%−0.631+0.516
CYTBCytochrome b1,143 bp27.6%25.4%12.0%35.0%46.98%−0.490+0.043
12S rRNA12S ribosomal RNA975 bp31.0%22.3%20.6%26.2%46.77%−0.118+0.164
16S rRNA16S ribosomal RNA1,599 bp34.1%22.1%18.4%25.4%43.78%−0.160+0.212
D-loopControl region (D-loop)1,352 bp31.7%24.9%16.6%26.8%43.42%−0.233+0.119

Codon usage

Counts per codon, darker is more frequent

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.7%
UUU71
UUC146
Leu L17.7%
UUA81
UUG21
CUU74
CUC163
CUA293
CUG39
Ile I7.5%
AUU82
AUC202
Met M4.6%
AUA144
AUG30
Val V4.6%
GUU39
GUC47
GUA71
GUG17
Ser S7.6%
UCU39
UCC76
UCA105
UCG12
AGU13
AGC42
Pro P5.7%
CCU26
CCC80
CCA106
CCG6
Thr T9.3%
ACU59
ACC146
ACA144
ACG5
Ala A7.6%
GCU64
GCC109
GCA106
GCG8
Tyr Y2.9%
UAU30
UAC79
His H3.0%
CAU23
CAC90
Gln Q2.6%
CAA90
CAG9
Asn N3.3%
AAU20
AAC106
Lys K2.3%
AAA80
AAG7
Asp D1.7%
GAU21
GAC44
Glu E2.5%
GAA81
GAG13
Cys C0.7%
UGU7
UGC19
Trp W2.8%
UGA95
UGG12
Arg R1.9%
CGU9
CGC20
CGA39
CGG3
Gly G5.9%
GGU27
GGC68
GGA97
GGG32
Stop 0.3%
UAA6
UAG1
AGA1
AGG2

Genome map

38 annotated features in NC_010962.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (44.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,3521,352 bp–43.4%
tRNA-PheTransfer RNA1,3531,42068 bp+–
12S rRNARibosomal RNA1,4212,395975 bp+46.8%
tRNA-ValTransfer RNA2,3962,46772 bp+–
16S rRNARibosomal RNA2,4684,0661,599 bp+43.8%
tRNA-Leu (UUR)Transfer RNA4,0674,14175 bp+–
ND1Protein-coding gene4,1545,131978 bp+45.6%
tRNA-IleTransfer RNA5,1305,20273 bp+–
tRNA-GlnTransfer RNA5,2125,28271 bp−–
tRNA-MetTransfer RNA5,2825,35069 bp+–
ND2Protein-coding gene5,3516,3901,040 bp+42.7%
tRNA-TrpTransfer RNA6,3916,46070 bp+–
tRNA-AlaTransfer RNA6,4626,53069 bp−–
tRNA-AsnTransfer RNA6,5336,60573 bp−–
tRNA-CysTransfer RNA6,6086,67467 bp−–
tRNA-TyrTransfer RNA6,6746,74471 bp−–
COX1Protein-coding gene6,7468,2961,551 bp+45.9%
tRNA-Ser (UCN)Transfer RNA8,2888,36174 bp−–
tRNA-AspTransfer RNA8,3648,43269 bp+–
COX2Protein-coding gene8,4349,117684 bp+44.0%
tRNA-LysTransfer RNA9,1199,19072 bp+–
ATP8Protein-coding gene9,1929,359168 bp+42.9%
ATP6Protein-coding gene9,35010,033684 bp+44.0%
COX3Protein-coding gene10,03310,816784 bp+46.2%
tRNA-GlyTransfer RNA10,81710,88569 bp+–
ND3Protein-coding gene10,88611,237352 bp+44.4%
tRNA-ArgTransfer RNA11,24011,30869 bp+–
ND4LProtein-coding gene11,31011,606297 bp+49.5%
ND4Protein-coding gene11,60012,9771,378 bp+44.6%
tRNA-HisTransfer RNA12,97813,04770 bp+–
tRNA-Ser (AGY)Transfer RNA13,04813,11366 bp+–
tRNA-Leu (CUN)Transfer RNA13,11313,18371 bp+–
ND5Protein-coding gene13,18414,9981,815 bp+44.2%
CYTBProtein-coding gene15,00916,1511,143 bp+47.0%
tRNA-ThrTransfer RNA16,15616,22570 bp+–
tRNA-ProTransfer RNA16,24416,31370 bp−–
ND6Protein-coding gene16,31916,840522 bp−47.7%
tRNA-GluTransfer RNA16,84516,91874 bp−–

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