Plectropomus areolatus
Squaretail coralgrouper
GC content
43.57%
Whole genome
Non-coding
1,135 bp
D-loop 1,080 bp
Where Squaretail coralgrouper sits among 2,335 species
Whole-genome GC content against maximum lifespan. Squaretail coralgrouper has the 1,311th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,770 bp
- GC skew (G − C) / (G + C)
- −0.250
- AT skew (A − T) / (A + T)
- +0.021
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,770 bp
Protein-coding11,407 bp
12S rRNA952 bp
16S rRNA1,709 bp
All tRNA1,567 bp
D-loop1,080 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.36% | −0.363 | −0.082 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 44.93% | −0.430 | +0.049 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.36% | −0.201 | −0.096 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.99% | −0.257 | +0.044 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.10% | −0.250 | −0.019 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.52% | −0.430 | −0.110 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.61% | −0.263 | −0.082 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.42% | −0.278 | −0.256 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.79% | −0.382 | −0.106 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.69% | −0.363 | −0.021 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 40.95% | −0.355 | −0.033 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.25% | −0.325 | +0.326 | |||||
| CYTBCytochrome b | 1,141 bp | 43.38% | −0.317 | −0.077 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 46.43% | −0.077 | +0.173 | |||||
| 16S rRNA16S ribosomal RNA | 1,709 bp | 44.00% | −0.043 | +0.208 | |||||
| D-loopControl region (D-loop) | 1,080 bp | 34.63% | −0.176 | +0.079 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU115
UUC122
Leu L17.4%
UUA139
UUG19
CUU163
CUC136
CUA152
CUG53
Ile I7.4%
AUU145
AUC137
Met M4.1%
AUA105
AUG52
Val V5.5%
GUU49
GUC62
GUA78
GUG20
Ser S6.6%
UCU49
UCC54
UCA82
UCG10
AGU11
AGC46
Pro P5.7%
CCU90
CCC55
CCA63
CCG9
Thr T7.9%
ACU75
ACC99
ACA117
ACG10
Ala A9.1%
GCU83
GCC112
GCA134
GCG16
Tyr Y3.2%
UAU44
UAC77
His H2.8%
CAU37
CAC69
Gln Q2.5%
CAA81
CAG13
Asn N3.0%
AAU31
AAC82
Lys K2.0%
AAA65
AAG11
Asp D1.9%
GAU18
GAC56
Glu E2.6%
GAA77
GAG21
Cys C0.7%
UGU12
UGC16
Trp W3.0%
UGA99
UGG15
Arg R2.0%
CGU12
CGC21
CGA37
CGG7
Gly G6.2%
GGU61
GGC63
GGA74
GGG39
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_021405.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,021 | 952 bp | + | 46.4% |
| tRNA-Val | Transfer RNA | 1,022 | 1,092 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,801 | 1,709 bp | + | 44.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,802 | 2,874 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,875 | 3,849 | 975 bp | + | 46.4% |
| tRNA-Ile | Transfer RNA | 3,855 | 3,924 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,924 | 3,994 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,995 | 4,063 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,064 | 5,109 | 1,046 bp | + | 44.9% |
| tRNA-Trp | Transfer RNA | 5,110 | 5,180 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,182 | 5,250 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,252 | 5,324 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,358 | 5,424 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,425 | 5,494 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,496 | 7,046 | 1,551 bp | + | 44.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,047 | 7,117 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,120 | 7,193 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,200 | 7,890 | 691 bp | + | 44.0% |
| tRNA-Lys | Transfer RNA | 7,891 | 7,966 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,968 | 8,135 | 168 bp | + | 38.1% |
| ATP6 | Protein-coding gene | 8,126 | 8,809 | 684 bp | + | 41.5% |
| COX3 | Protein-coding gene | 8,809 | 9,593 | 785 bp | + | 45.6% |
| tRNA-Gly | Transfer RNA | 9,594 | 9,663 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,664 | 10,012 | 349 bp | + | 48.4% |
| tRNA-Arg | Transfer RNA | 10,013 | 10,081 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,082 | 10,378 | 297 bp | + | 45.8% |
| ND4 | Protein-coding gene | 10,372 | 11,752 | 1,381 bp | + | 45.7% |
| tRNA-His | Transfer RNA | 11,753 | 11,821 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,822 | 11,903 | 82 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,907 | 11,979 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,980 | 13,818 | 1,839 bp | + | 41.0% |
| ND6 | Protein-coding gene | 13,815 | 14,336 | 522 bp | − | 44.3% |
| tRNA-Glu | Transfer RNA | 14,337 | 14,405 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,408 | 15,548 | 1,141 bp | + | 43.4% |
| tRNA-Thr | Transfer RNA | 15,549 | 15,620 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,620 | 15,690 | 71 bp | − | – |
| D-loop | Control region | 15,691 | 16,770 | 1,080 bp | – | 34.6% |