Plectropomus laevis
Blacksaddled coralgrouper
GC content
43.10%
Whole genome
Non-coding
1,143 bp
Including the D-loop
Where Blacksaddled coralgrouper sits among 2,335 species
Whole-genome GC content against maximum lifespan. Blacksaddled coralgrouper has the 937th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,774 bp
- GC skew (G − C) / (G + C)
- −0.232
- AT skew (A − T) / (A + T)
- +0.012
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,774 bp
Protein-coding11,407 bp
12S rRNA952 bp
16S rRNA1,705 bp
All tRNA1,567 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.92% | −0.342 | −0.095 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 44.74% | −0.423 | +0.055 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.81% | −0.148 | −0.125 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.09% | −0.227 | +0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.294 | −0.040 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.67% | −0.411 | −0.128 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.35% | −0.219 | −0.138 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 45.56% | −0.308 | −0.211 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 44.44% | −0.364 | −0.115 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.95% | −0.367 | −0.021 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 41.71% | −0.348 | −0.024 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.06% | −0.296 | +0.301 | |||||
| CYTBCytochrome b | 1,141 bp | 43.82% | −0.300 | −0.098 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 46.32% | −0.061 | +0.166 | |||||
| 16S rRNA16S ribosomal RNA | 1,705 bp | 43.81% | −0.058 | +0.209 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU124
UUC117
Leu L17.4%
UUA121
UUG17
CUU164
CUC134
CUA177
CUG50
Ile I7.4%
AUU177
AUC106
Met M4.2%
AUA110
AUG51
Val V5.4%
GUU69
GUC42
GUA72
GUG22
Ser S6.5%
UCU53
UCC51
UCA77
UCG12
AGU13
AGC43
Pro P5.6%
CCU84
CCC52
CCA59
CCG17
Thr T8.2%
ACU77
ACC99
ACA123
ACG12
Ala A8.8%
GCU80
GCC113
GCA126
GCG17
Tyr Y2.9%
UAU53
UAC59
His H2.8%
CAU47
CAC59
Gln Q2.5%
CAA85
CAG10
Asn N3.2%
AAU41
AAC79
Lys K1.9%
AAA62
AAG12
Asp D2.0%
GAU25
GAC50
Glu E2.6%
GAA82
GAG17
Cys C0.7%
UGU11
UGC17
Trp W3.0%
UGA96
UGG19
Arg R2.0%
CGU16
CGC15
CGA36
CGG9
Gly G6.3%
GGU59
GGC70
GGA66
GGG44
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
37 annotated features in NC_057260.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,022 | 952 bp | + | 46.3% |
| tRNA-Val | Transfer RNA | 1,023 | 1,093 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,094 | 2,798 | 1,705 bp | + | 43.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,799 | 2,871 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,872 | 3,846 | 975 bp | + | 44.9% |
| tRNA-Ile | Transfer RNA | 3,852 | 3,921 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,921 | 3,991 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,992 | 4,060 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,061 | 5,106 | 1,046 bp | + | 44.7% |
| tRNA-Trp | Transfer RNA | 5,107 | 5,177 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,179 | 5,247 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,249 | 5,321 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,359 | 5,426 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,427 | 5,496 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,498 | 7,048 | 1,551 bp | + | 42.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,049 | 7,119 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,122 | 7,195 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,202 | 7,892 | 691 bp | + | 40.1% |
| tRNA-Lys | Transfer RNA | 7,893 | 7,968 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,970 | 8,137 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 8,128 | 8,811 | 684 bp | + | 41.7% |
| COX3 | Protein-coding gene | 8,811 | 9,595 | 785 bp | + | 45.4% |
| tRNA-Gly | Transfer RNA | 9,596 | 9,665 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,666 | 10,014 | 349 bp | + | 45.6% |
| tRNA-Arg | Transfer RNA | 10,015 | 10,083 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,084 | 10,380 | 297 bp | + | 44.4% |
| ND4 | Protein-coding gene | 10,374 | 11,754 | 1,381 bp | + | 44.0% |
| tRNA-His | Transfer RNA | 11,755 | 11,823 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,824 | 11,903 | 80 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,910 | 11,982 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,983 | 13,821 | 1,839 bp | + | 41.7% |
| ND6 | Protein-coding gene | 13,818 | 14,339 | 522 bp | − | 44.1% |
| tRNA-Glu | Transfer RNA | 14,340 | 14,408 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,411 | 15,551 | 1,141 bp | + | 43.8% |
| tRNA-Thr | Transfer RNA | 15,552 | 15,623 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,623 | 15,693 | 71 bp | − | – |